RNA id: XM_043237280.1


Basic Information

Item Value
RNA id XM_043237280.1
length 1885
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC122343011
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18810860 ~ 18814594 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCAGAACCAGGAAACGGGAATCTCGGGGAAAAGAGAAACtgaagtgtgtttgtttctctgtaTTCGGGCAGTAAAATGGCAGAAACCAGATTTTCTCAGGATGAGTTCATATGTCCAGTGTGTCTGGAGCTATTCAAGGACCCAGTGACGATTTCCTGTGGCCACAGTTACTGTAAGAGCTGTATTGCAGGCCACTGGGATCTGGAGGATCGGTTCAGAGTCTACAGCTGTCCTCAGTGCAGACAGACCTTCGATCCAAGACCTGCTTTAGGTAAAAACACCATCCTGGCAGAAGTGGTGGAGAAATTGAAGAAGACTAATATTCTTGCTGACTGTTACGCTGGAGCTGGAGATGTGCAGTGTGACATCTGtactggaaaaaaatacaaagctgTCACGTCCTGTCTTGTGTGTCTGAGCTCTTACTGTCAAACCCATCTTGAACAACATGAGAGCTTCTTTAAAGAGAAGAAACACAATTTAACTGAGGTCACCGGACGACTTCAGGAGATGATCTGCCGTGAACATGACAAACAGCTGGACATGTACTGTATTACCGACCAACAATGcatttgtgtactgtgtacaaaATATGAGCATAAAAACCACAACACTGAATCTGCTGCATCCCAGAGGACAAAGAAACAGATGCAGGTGAAGGAGATACAGAGAAGGTTTCAGCAAAGAAtccagcagagagagaaagatcttCAGCAGCTGAGAGAGTCTGTGGAGTCTCATAAGCGCTCAGCACAGACAGCAATGGAGCACAGTGAGAGGATCTTCACTGAGCTAATCCTCTCCATTGAAAAACGACGCTCTGAGCTGATTCAGCAGATGAGAGATCGGGAAAAGTCTGAAGTGAGTCGAGCTGAAGAACGACTGAGGCAACTCAAGCAGGAGATCAATGATCTGAGGAGGAGACATGCTGAGCTCGACCAGCTTTCAAAAACACAGGATCACATCCTTTTCCTACAGAGCTTCCAGTCTCTGTCAGCACCTCCTGAATCTACGAATGTAAATGACAACACCTTCATTTCTCTATTCTCTTTCGATGGCGTGAGAGAATCTGTCAGTCAGCTGAGACACAAACTGCAGGTTTTCTGCAAAGAAGAGCTCAAAAAGATCTCGGACAGAGTCAGATTCACCAACATTGCTCCCAGGACCAGGACTGAGTTCCTCCAATATTCTCATCACCTCACTCTGGATACAAACACTGTGAATAAAGGCCTCCACCTGTCTGTGAAGAACCGAACGATTGAATATACTGTTGAAAAGCAGccatatcctgatcatccaAACCGATTTGATTATTATcgtcaggtgttgtgtagagagagtgtgtgtggacgctgttactgggagattGAGTGGATGGGATATGTGgatatatcagtgtcatataagagcATCGGCAGGAAGGGGCGGGGTGATGAAAATTGGTTTGGACGTAacgatcagtcctggagtttgttcTGCTCTCCCTCCGGTTACTCATTAagacacaacaacaaaaagacagaTCTCCATGTGAAGCCCATCAGCAGTAGaataggagtgtatgtggatgggagcgcaggaactctgtccttctacagcgtctctgacacaatgagcctcatccacacagtccagaccacattcactcaacCGCTTTATCCTGGGTTTGGGGTTGATTATTATGAATCATCTGTGAAGTTGTGTTGGtgaatcagaaaaaaatgtagagATGTTCTAGCCATAATAATTTGAGCTGCGTGAAGAGTTCTTCTTAAAATGTTATACAAAAAGTGTTTCTtgaaattttactgtaaaacattcTCTGTAAGATGTAAATCTTTTGCAGTCACCCATTAGTAATTAATACAAGATACCTGTCAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43888 lncRNA upstream 25614 18785045 ~ 18785246 (+) True G29627
TU43851 lncRNA upstream 145777 18662860 ~ 18665083 (+) True G29600
TU43831 lncRNA upstream 207544 18600428 ~ 18603316 (+) True G29591
XR_006250718.1 lncRNA upstream 216744 18591447 ~ 18594116 (+) True LOC122343196
TU43761 lncRNA upstream 345023 18441631 ~ 18465837 (+) True G29548
TU43902 lncRNA downstream 289 18814883 ~ 18815278 (+) True G29633
XR_006250682.1 lncRNA downstream 88641 18903235 ~ 18907824 (+) True LOC122343164
TU44148 lncRNA downstream 117725 18932319 ~ 18932690 (+) True G29777
TU44169 lncRNA downstream 152793 18967387 ~ 18967714 (+) True G29797
TU44175 lncRNA downstream 231116 19045710 ~ 19053414 (+) True G29803
XM_043237430.1 mRNA upstream 897 18805450 ~ 18809963 (+) False LOC122343102
XM_043237434.1 mRNA upstream 897 18805451 ~ 18809963 (+) False LOC122343102
XM_043237431.1 mRNA upstream 897 18806132 ~ 18809963 (+) True LOC122343102
XM_043237432.1 mRNA upstream 897 18806218 ~ 18809963 (+) False LOC122343102
XM_043236045.1 mRNA upstream 28050 18758554 ~ 18782810 (+) True LOC122342235
XM_043237200.1 mRNA downstream 9331 18823925 ~ 18832593 (+) True LOC122342961
XM_043237361.1 mRNA downstream 51259 18865853 ~ 18869783 (+) True LOC122343055
XM_043237394.1 mRNA downstream 80307 18894901 ~ 18897790 (+) True LOC122343078
XM_043237213.1 mRNA downstream 94322 18908916 ~ 18915022 (+) True LOC122342974
XM_043237355.1 mRNA downstream 104006 18918600 ~ 18922510 (+) False LOC122343048
TU43756 other upstream 349543 18436460 ~ 18461317 (+) True G29545
TU43729 other upstream 509671 18300415 ~ 18301189 (+) True G29526
TU42966 other upstream 2336479 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 2825134 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 2969005 15841372 ~ 15841855 (+) True G28891
TU43926 other downstream 68585 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 475626 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 916668 19731262 ~ 19786128 (+) False G29835
TU44230 other downstream 931147 19745741 ~ 19747442 (+) False LOC122343071
TU44267 other downstream 1223344 20037938 ~ 20040195 (+) False LOC122343063

Expression Profile