RNA id: XM_043237282.1


Basic Information

Item Value
RNA id XM_043237282.1
length 2904
RNA type mRNA
GC content 0.39
exon number 7
gene id LOC122343013
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 22759421 ~ 22769574 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAATCTAATCAAAATATGCTCAAaggcctgatcacacacacaaaagacacTACTGTGAGCATCAGAAAAATAAGTGCACACattaaacaattacaaaaacaggACATCTCAGATGAAACTTCAGTCAACCTATTCTACTGCTTACTTGAGCTCAAAGATCATTCATTATATGAGGAAATAAATCAATACTTAAGTTCAAATAAACGTCCAGAAAGAGACCTCTCCTCTTCAATGTGCACAGTGCTGACCTATGTATTGCTGATGTCAGAGAAGGTACTGGAGGAATTTAATCCAAAGCAGTACACGTCCTCATCTTCAAACTTCAAGAGACTTGTCCCAGCTGTGAGATGCTGCAAAAAAGCACTATTTGATGGCTGTGGTCTTGATGAAAAATACTGTGAAACTGTGTCTTCAGCTCTACAACTGACAAATTCCCATCTGACAGAGTTGGACTTAAGTAGCAATGACCTGAAGGATTCAGGAGTAAAGCTGATTTATGATGGCCTGAAGAGTCCACACTGTCAACTAGGCATACTGAGACTATGTGGATGTAATCTCACTGCAAAGTCCTGTGAAAGCTTGGCTTCTGCTCTACAATCCTCAAGCTCTGTcttgagagagctggacctgagtaacaatgacctccatgattcaggagtgaagcttcttTCTGATGGACTAAAGAGTCTAAACTGTCAACTGAATATACTGAGATGTTCTAtatgtaatctcactgcacagtcttgtgagagtttgtcttcagttttacaatcctcaaactctctcctgaaagagctggatctgagtaacaatgacctgcaggattcaggactAAAGCTTTTTTCTGATGCACtaaagagtccaaactgtcagcTGGATATATTGAGgttgtctggctgtatggtgacagaggaaggctgtcattatttgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatcctggagattcaggagtgaagctgctctctgaaaaactagAGGACTCAACCTGCTCATTGGACAAACTCAATGTGGATCATGGAGGAGAATCCAGGATTAAAGAAGGACTGAAAAAATacgagtgttttttcacactggatccaaacacagcataCACTTGTCTCTATCTGTCTAAGAAGAACAGAAAGGTGATGCATGTGTCTCagtcgtatcctgatcatccagacagatttgatgatGTTTGTCAGGTGTTGTgtcgagagagtgtgtgtggacgctgttactgggagactgagtggaCTGGGCTTGTGCATATATCCGTGTCCTATAAAAGAGGTGATGAGTCTGTGTTTGGACgcaatgatcagtcctggagtttgtgCTGCTCTCCTCACAGATACTCATTCATACACAATAACATAGAGACTGATCtctctgtgaagcccatcaTGAACAGAAGAATAGAAAGAACAGGAGTGTATGAATATATTTctagagtaggagtgtatgtggatgagagcgcaggaactctgtccttcttctgcatctctgacacaatgagactcatccacacagtccagaccacattcactcagacactctgtcctgggtttactgtttattataaatcatcAGTGAAtctgtgttgatgaatcagaagagactgagCAGAGATTCTACCCATAATGCTTTGAGCTGCGTGGCAAATTAGTAACAATGAGATGACATCAATACTGCAGCTCAACTTCTGTCACTGAAATAACAGAATAATGCTTGAGAAATACTCAAAGgcagataagtgtgtgtgtgagtgtgagagagggagagtcaTGCTAAGTGATGATGTGAATCTGAATTTATGAGcctacatttgtgttttaattattgtgtgcctttaataatttgtattattctcAAAATTACCTTTCAATTCAAATGTGTCTTTCACAAACATGTCATTCTCTGTTttgtacagaaataataaaagacgGTGACGGATCAACTTGAGATGAGACtgagattacatttttttaatgaataaagtcGATTCCTCACAAAAATGAAacgaacaaaaataataaaataaaatgtgctctTAAAATGTACTCTTCACCCTGATTAAGATCTGTTTATGTGCACAAGCGCTCATCTGACAAAATTTAAAAGCTGAGAGTCCTGAGACCTTGTTTAATATCAGAAGTAACATGATCTTTCATCTCTGTTGATGTGttgtcagttttctctttgctctgcgatgtatttttcactgtgtgagaaCATGTGTGTGGTTTCAGAGCTGCATTGTTTGTCGGGCATTAGCTCTTACTATGTTCGATCACAAGTAAATGATTTCGTCCAGGAAttgtaaaatcaaaatgttaaaccaaaaaaactaaGGTATTACTCACAACAATCGTTGTATCTTGCTATTTTAACTTACACTCTGTGTGTACTAATCCATGTTGCTTAAAGATGAACATGCTTTGAGCGGGATCGACTAATTTATGTGGAAACATCAACATCCTAATTTCTGCTTGGCTGATGCCATTTAACTCCATGTAACTCGGCAGAGACCTTTCTCCGTAAGTAGCTATATTTAGTCTCAAAATTGCTGAATTGGCAACACTGCATGTGAACCCGTCAAAGATAAATGTGATTGTAAGGATGACACCATTAGCATGCTGCACAAGATGTCATGTGCGTCATTCAAATTTGCTCCTCATAATACAACattctgaataaattatgcaaactgTACATAAGAACACGATAAATGTAAAACACTatagaaattaattttgattatgTTCACTCACATTTAACATTGTATAATCATTAACTCAGTTACATTCTCCCCACTGAACTTAGTATGCATCTATCAAAAATTCTGCCAATAAACACTTTCCCCACCA

Function

GO: NA

KEGG:

id description
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45232 lncRNA downstream 189363 22569635 ~ 22570058 (-) True G30547
TU45204 lncRNA downstream 258247 22500162 ~ 22501174 (-) True G30525
TU45195 lncRNA downstream 271252 22487420 ~ 22488169 (-) True G30520
TU45193 lncRNA downstream 272302 22486775 ~ 22487119 (-) True G30518
TU45181 lncRNA downstream 330664 22425592 ~ 22428757 (-) True G30506
TU45728 lncRNA upstream 1281 22770855 ~ 22772854 (-) True G30920
TU45737 lncRNA upstream 17972 22787546 ~ 22789302 (-) True G30926
TU45749 lncRNA upstream 88685 22858259 ~ 22861620 (-) False G30938
TU45751 lncRNA upstream 88685 22858259 ~ 22861620 (-) True G30938
TU45790 lncRNA upstream 282174 23051748 ~ 23053620 (-) True G30967
XM_043237408.1 mRNA downstream 66711 22690338 ~ 22692710 (-) True LOC122343088
XM_043237357.1 mRNA downstream 78216 22676458 ~ 22681205 (-) True LOC122343051
XM_043236109.1 mRNA downstream 115641 22637421 ~ 22643780 (-) True LOC122342316
XM_043236108.1 mRNA downstream 150643 22600546 ~ 22608778 (-) True LOC122342315
XM_043237369.1 mRNA downstream 165540 22587723 ~ 22593881 (-) True LOC122343061
XM_043237500.1 mRNA upstream 12088 22781662 ~ 22782254 (-) True LOC122343143
XM_043237504.1 mRNA upstream 70442 22840016 ~ 22856132 (-) True LOC122343148
XM_043236113.1 mRNA upstream 426973 23196547 ~ 23197615 (-) True LOC122342322
XM_043236114.1 mRNA upstream 431896 23201470 ~ 23219173 (-) True LOC122342323
XM_043236115.1 mRNA upstream 460468 23230042 ~ 23237080 (-) True LOC122342324
TU45110 other downstream 514261 22128454 ~ 22245160 (-) True G30450
TU45123 other downstream 542951 22216035 ~ 22216470 (-) True G30457
TU45011 other downstream 982615 21629617 ~ 21776806 (-) True G30396
TU44977 other downstream 1019091 21737091 ~ 21740330 (-) True G30372
TU45006 other downstream 1372984 21383469 ~ 21386437 (-) True G30395
TU45768 other upstream 665406 23434980 ~ 23437015 (-) False LOC122342328
TU45855 other upstream 727555 23497129 ~ 23546369 (-) False G31017
TU45890 other upstream 975912 23745486 ~ 23771768 (-) True G31050
TU45934 other upstream 1340650 24110224 ~ 24110673 (-) True G31091
TU46017 other upstream 1534522 24304096 ~ 24497596 (-) True G31134

Expression Profile