RNA id: XM_043237283.1


Basic Information

Item Value
RNA id XM_043237283.1
length 2080
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC122343014
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21039780 ~ 21044018 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTCCCTGGCTGAGGCAAGCTAAAACTCAAGTGTGACTGAGCCGTTGTGTGTTTACGCTACTTGTCTTCGTGCAGTAAAATGGCAGAAGCCCGATTTTCTCAAGAGGATTTCATGTGTCTGGTGTGTCTGGATGTCCTGAAGGATCCAGTGACCATTCCCTGTGGACACAGTTTCTGTATGGGATGTATAACAGATTGCTGGGATCAGCAGGATCAGATGAGAGCCTACAGCTGCCCTCAGTGCAGACAGACCTTCATTCCAATACCTGCTTTATCTAAAAACAACTTGCTGGCTAAAGCGGTGGAAAAACTGAAGAAACGTTCCGCTCACTCTTACGCCGAACCTGGAGACGTGCAGTGTGACGTCTGTgctgaaagaaaacacaaagccGTCAAGTCCTGCCTGATGTGTCTGGAATCGTATTGTCAAACTCATTTCGACCATCATGAGGAATTTCACTCGCATAAGTGCCACAAAGTGATTGATGCCACTGGACAGCTGCATGAGAAGATCTGCTGTCAACACGACAAGCTTCTggagtttttttgtaaaactgatCAACAGTTTATATGTGTGATTTGTACGATGtatgaacataaaaaacacaacactgtATCAGCTGCCACACAGTGGATGGAGAAACAgaagCAGCTGAAGGAGACACGGAGAAGGTTCCAGCAGAGAATCCAGCAGAGGGAGAAAGATCTTCAGCAGCTGAAAGACGCTATGAAGTCTCATAAGGATTCTGCGCAGACAGCGGTGGAGGACAGCGAGAGGATCTTCACTGAGCTCATCAGCTCCATTGAGAAAAGACGCTCTGAGTTCACACAGATGATAAGAGATCAGGAAAAGGCTGCAGTGAGTCGAGCTGAAGAACAACTGGAACGACTGGAGCAAGAGATCAATGATCTGAGGAGGAGAGACGCTAAGCTGGAGAAGCTTTTACAAACACAGGATCATATCCATTTGCTTCAGAGCGTTCAGTGTCTCTCAGCACCACCTGAATCTACAGAAGTACCCAACATTCTCTTCggttctctcttctcttttgaTAGCATTAGAGAATCTCTCAGTCAGCTGAGAGGCAAACTGGAGGATTTCTGGAAAAAGGAGCTCAGAAACAGAGTCACATTCACCGACGTGGTTCCCAGGACCAGGAACGACTTCCTACAATATTCCCATCATATCACTCTGGATCCAAATACAGCACACAAACGGCTTTATCTGTCTAAGAGGAACAGAGTGATTACTAATATTCACACAGAACAGCCGTaccctgatcatccagacagatttggtTTTTGGCTTCAGGTGTTGGGTAAAGAGAGTGTGAgcggacgctgttactgggaggtcGAGTGGAACGGGATGTATGGTGTGTATATATCGGTGTCATATAAGAGCATCAGAAGGAAGGAAGAGGATTATAATAGTTGGTTTGGAcataatgatcagtcctggagtctGTACTGCTGTCCCTTCAGATTCTCATTCATCCACAATAAGATAGAGACTGACCTCCCTGTAGCTTCCAGTCGTAGAGTAGGAGTGTTtgtggatgagagcgcaggaattctgtccttctacagcatCTCTGACACAACGAgcctcatccacacagtccagaccacattcacacAGCCCCTCTACCCTGGCTTTTGGGtttattatgattattcatcagtgaaactgtgttaAAGAATCAGAATAGATTCACAAGAGATTCTACCCATAATGCTTTGAGCTGCATCATAAATCAGTGACagtgagatgatgatgatgatatcaAGTCATAtgtctttaaaatgctttttcggcagcttgttttctttcaatacGATAAATCAGTTCcaacaataaacacaaaaccagtcctaactgaaagaaaacaatatcaATGTCAATATTTGGTTATATGTGTGACCCCTCTGTGAAACTAAAAAAGTCTAAAGTCTCATTGTCTAATTTTGAGTACTCATAACCATAAAATGACGAAAATaggtcatttttgtttattgctgTAAATGAGTTATATACCAAGGTTTCGAGATAAAATTAAAGGCAATCTTACcccaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44493 lncRNA upstream 64003 20910154 ~ 20975778 (+) True G30024
XR_006250691.1 lncRNA upstream 67532 20971510 ~ 20972249 (+) True LOC122343171
TU44494 lncRNA upstream 104869 20912558 ~ 20934912 (+) True G30025
TU44456 lncRNA upstream 156873 20880449 ~ 20882908 (+) True G30003
TU44458 lncRNA upstream 254251 20785309 ~ 20785530 (+) True G30005
TU44529 lncRNA downstream 73643 21117661 ~ 21118522 (+) True G30056
XR_006250684.1 lncRNA downstream 82067 21126085 ~ 21126420 (+) True LOC122343166
XR_006250727.1 lncRNA downstream 87136 21131154 ~ 21133602 (+) True LOC122343205
XR_006250681.1 lncRNA downstream 119738 21163756 ~ 21167242 (+) True LOC122343163
TU44570 lncRNA downstream 204169 21248187 ~ 21248425 (+) True G30077
XM_043236079.1 mRNA upstream 18909 21018152 ~ 21020872 (+) True LOC122342283
XM_043236078.1 mRNA upstream 110618 20921435 ~ 20929163 (+) True LOC122342280
XM_043237467.1 mRNA upstream 121092 20917550 ~ 20918689 (+) True LOC122343116
XM_043237448.1 mRNA upstream 133055 20902219 ~ 20906726 (+) True LOC122343111
XM_043237174.1 mRNA upstream 239240 20790175 ~ 20800541 (+) True LOC122342951
XM_043237194.1 mRNA downstream 11474 21055492 ~ 21066850 (+) False LOC122342958
XM_043237195.1 mRNA downstream 11475 21055493 ~ 21066850 (+) False LOC122342958
XM_043237193.1 mRNA downstream 11476 21055494 ~ 21066850 (+) True LOC122342958
XM_043237211.1 mRNA downstream 49435 21093453 ~ 21112328 (+) True LOC122342972
XM_043237398.1 mRNA downstream 112055 21156073 ~ 21161025 (+) False LOC122343080
TU44410 other upstream 332935 20696672 ~ 20706846 (+) True G29961
TU44357 other upstream 670965 20367675 ~ 20368816 (+) True G29921
XR_006250910.1 other upstream 791552 20248111 ~ 20248229 (+) True LOC122343930
unassigned_transcript_379 other upstream 932654 20107054 ~ 20107127 (+) True trnam-cau_25
unassigned_transcript_377 other upstream 933426 20106282 ~ 20106355 (+) True trnam-cau_24
TU44534 other downstream 74544 21118562 ~ 21142831 (+) True G30058
TU44553 other downstream 125231 21169249 ~ 21170595 (+) False LOC122342286
TU44625 other downstream 324625 21368643 ~ 21761178 (+) False LOC122342301
TU44637 other downstream 344175 21388193 ~ 21630120 (+) True G30119
TU44630 other downstream 595522 21639540 ~ 21641756 (+) True G30115

Expression Profile