RNA id: XR_006250667.1


Basic Information

Item Value
RNA id XR_006250667.1
length 3375
RNA type transcript
GC content 0.39
exon number 8
gene id LOC122343019
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 22661826 ~ 22682712 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAAACTAAACCTGTTTTACTCTGTTGATGTAAACTGATTTGAAAGATGAGCCGGGTCTTGTATCAAATCtctgtgatcatgtgactgatGACGTTTGAGGTGATTCAAATCTTTAGTgtggtttaatttattataaagagACATTAGACTcaatgcaaacaaacataaaccaACACACAAGAACAGGAAGAGCTCTGACATCACTGTACTTCAGGAGAAAGTGGAAGTCAAACCTAATCAAAGCCTGAAACTGAATCTCTCtataaataacagaatatttagtcatttaaagaCTCTCGTGTGCACATCTGATCCTCACAGTAATGTCATCCTCCGGTGGTCCACTGACTGACACTCTTCAGTGCTCTATATGTCTGGAGGTGTTCACTGATCCAGTCTCGACTCCATGTGGACACAACTTCTGCAAGACCTGTCTGAATAAGTGCTGGGACAACAGCCAGACCTGCATCTGTCCATACTGTAAAGaaacattcaaacaaaaacCTGATCTCAAGACTAACACCACACTCCGAGAGCTTGCAGATCACTATAAACAGAAGAGTCCTGAGAAAACATCTGATGTTCTGTGTGACTTCTGTGAGGAGAGAAAGCTGAAAGCCCTGAAGTCGTGTGTGATGTGTCAGAGCTCTTACTGTCAAACTCATCTGGAGCGTCATTTCAGAGTGGCAGCTTTGAAGAAACACAAACTGATGGATCCTGTGAGTAATCTGGAGGACTATATTTGTCAGAAACATGAAAGACCTCTGGATCTGTTCTGTAGAGAtgatcagatgtgtgtgtgttcagtctgTACTGCTACAGACCACGAGAACCACAACACTGTTCCTATAGAAGAGGAGACCACAGAGAAGAAGACTGAACTGATGAAGACACAGAAAGATGTGCAGCAGATGATCCAAAACAAAATCAAGAAGATTCAAGACATCAAACGCTCAACAGAAGCCAGAAAAagaaacacagagcagGAGAAAGCAGCCCGTGTGGAGCTCTTCACTGATCTGATCCGCTCCATTGAGAGACTTCAGACCGAACTACTGGAGATGATGGAGGAGCAGCAGAAAGCAGCAGAGAAACAAGAGCGAGATCTGATTGAAGAGCTGGAACAGGAGATCTCTGAGCTAAAGATGAGAAACATTGAGCTGGAGCAGCTCTCACACACTAAAGATCACCTCCACCTCCTACAGATCTACTCATTCCTGAGCATCTCCAGAAACACCAGGAACTATCCTGAGATCATTGTGAAGACTCATGAGAGTCTGGAGACTCTGAGGAGAGCTCTGACTCAACTGAAGGACACTATAGACGAGAAACTCTCACAAACTGTCTCTTCAGAGCTGAAGTGGATGCAGCAGTATGCAGTGGATGTGACTCTGGATCCTGATACAGCTCATCCTGATCTCATTCTGTCTGATGATGGAAAACAAGTGAGAGATGGAGACTTTACACAGAAACTCCCAGACAAACCTGAGAGATTTGATATATGTGTAAATGTCCTGGGAAAGGAGGGATTCTCCTCGGggagattttattttgaagtgcaGGTAAAAGAAAAGACTGAATGGATTTTAGGAGTGGCCAGAGAATCCATTCACAGGAAGGGACAGATCAAACTGAGTCCCAGAGATGGATACTGGACTTTGATTCTGAGGAATGGAGATGAATATAAAGCCTGTGAGGATTGtcgtgtctctctgtctctgagaGTGAAGCCACAGCGGGTTGGTGTGTTTGTGGATTATGACGAGGGTCTGGTCTCCTTTTATGATGAGTCCAGCTCTCATATCTACTCTTTCACCGATCAGTCTTTCACTGAAAAACTCTATCCATTATTTAGCCCATCCTTAAACTATGGAGGTAAAAACTCAAATCCACTGATCATCACACCTGTcagttataataaatgaatttctCTTGATATGAAATACAAGATTATAgttatgatttttataaattgttatgtgctgctcttttttttcaatttttgaaaatgcaataatttgatatttgaatatataatatgcacattattaatgtaataatgcaaatgtttattatatttttcataaaacattatatttttcataaaacatgcCATTTTATTCCTCCATCTCAATGTGACAAAGTGAAATTtcctgtaaaaacagtaataccctgtcaaaaagctgaaaaaagacGAAGTAGATGAACACCCCAAAGCTTGACAGTCATTTTACCTCTTCATTGGTCAACATTTCATTCCACATTTTTGAAGCTGCTTTACGTCTGATGATTGTGTTAGATTACACGTAGAAGCATCTATTGTTTAAGATTCTTCTTCacttggttatttttttatttattttaattcttatttattttaaaaaaccctCTAACGTAAAACAGATTCTAGGAGCACAGTATAACTTCTATATACTTAGACTTATAAATAGATTAATTGTTTATTACTGATTTCATTAGTTTTATAGTCACAGATTATACTAAATGTAgtggaaatgtaaataaatgatacaaaaaagtatgctaaacaaatattaatccATTAAGAATTATATACTGAGCACTGAAATATCACTAAAATCTCTCGAATAATTCCAGTCTCTGTTGTTCAGTCGTATGTTAGTTTGAATTATAACCTCAATCTGCCTCAGAACCAAAGAAGAGAAATCTTTGATCTGTGACTCCGcccagcagacacacacacacacacatctgttgcTGCTTTCCTGAAGGTAAACAATGATTCGCTATAGAAACTTTACAGGTAATCTTACTAATTCTAAAACATCACTTTTGAAATAGTAACAAAGGAACCTTGTGttgtttaaaagcatattatGGGAGAGAGATTGACAAAGCGAGTGTGATTACCTCCATCTgaaacagcattcattttttagatcatattcacaataaaacattagtttgaATGTACGATAGGCTTATATAATCCTTTTACCTTTAAGATTTTGAGATCTTGTTTCATATCAGAAGTAACTTGCTCTGTCTTCTCTGTCTGTGTGATGTATTTTCATTGCGTAAGAATAAGATTTGTAGTGTGAGAGTGGCACCGCTTTTTGTCTTACAGGTTTAATTAACCCTTtaactgtctctctctgtccacTCTAGTCCACTTCAGTAGAAGAGATCAGAGCAAAagcccagctgtgtgtcttTGAAGAATGATGCTTCTATGATTCAGTCATCACAATTCAATAGTCAAGATACAAGGCCTGGTGTCAGTCCAACACATCTGTGCAGTTTGCTGATGTGGCATGCCAGACAGACAAACCAACTACCCGTTCATATGGTACTCAGCTCTCGACAAAGACTCTCAGCTCTCCCTTCAGGAGCAT

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250726.1 lncRNA upstream 110476 22550101 ~ 22551350 (+) True LOC122343204
XR_006250689.1 lncRNA upstream 117995 22542511 ~ 22543831 (+) True LOC122343169
XR_006250715.1 lncRNA upstream 120341 22540384 ~ 22541485 (+) True LOC122343193
TU45207 lncRNA upstream 128794 22532415 ~ 22533032 (+) True G30528
TU45205 lncRNA upstream 155634 22505255 ~ 22506192 (+) True G30526
TU45301 lncRNA downstream 121326 22804038 ~ 23246017 (+) True G30598
TU45303 lncRNA downstream 125276 22807988 ~ 23249868 (+) True G30599
TU45312 lncRNA downstream 170769 22853481 ~ 22869703 (+) True G30607
TU45317 lncRNA downstream 175578 22858290 ~ 22861570 (+) True G30609
TU45335 lncRNA downstream 324262 23006974 ~ 23126523 (+) True G30624
XM_043237204.1 mRNA upstream 39940 22613115 ~ 22621886 (+) True LOC122342965
XM_043237494.1 mRNA upstream 100063 22548617 ~ 22561763 (+) True LOC122343138
XM_043237291.1 mRNA upstream 215548 22434054 ~ 22446278 (+) False LOC122343018
XM_043237290.1 mRNA upstream 215548 22434059 ~ 22446278 (+) True LOC122343018
XM_043236104.1 mRNA upstream 256004 22404053 ~ 22405822 (+) True LOC122342312
XM_043237429.1 mRNA downstream 2990 22685702 ~ 22689679 (+) False LOC122343101
XM_043237428.1 mRNA downstream 3028 22685740 ~ 22689679 (+) True LOC122343101
XM_043237257.1 mRNA downstream 13088 22695800 ~ 22706494 (+) True LOC122342996
XM_043237258.1 mRNA downstream 13088 22695800 ~ 22706494 (+) False LOC122342996
XM_043237259.1 mRNA downstream 13186 22695898 ~ 22706494 (+) False LOC122342996
TU44785 other upstream 360307 22296897 ~ 22301519 (+) False LOC122342310
TU44767 other upstream 429902 22231470 ~ 22231924 (+) True G30218
TU44625 other upstream 900648 21368643 ~ 21761178 (+) False LOC122342301
TU44630 other upstream 1020070 21639540 ~ 21641756 (+) True G30115
TU44637 other upstream 1031706 21388193 ~ 21630120 (+) True G30119
TU45293 other downstream 95330 22778042 ~ 22779597 (+) False LOC122342317
TU45355 other downstream 446394 23129106 ~ 23130189 (+) True G30636
TU45351 other downstream 474847 23157559 ~ 23159756 (+) True G30632
TU45341 other downstream 481057 23163769 ~ 23167257 (+) False LOC122342321
TU45342 other downstream 481057 23163769 ~ 23167257 (+) False LOC122342321

Expression Profile