RNA id: XM_043237302.1


Basic Information

Item Value
RNA id XM_043237302.1
length 1530
RNA type mRNA
GC content 0.58
exon number 10
gene id smyd1a
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17915571 ~ 17926697 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCGAGCCGCGGAGCCGTCAGTCCCCGTCCGAGGCCGAGAGAGTCAGCATGACCGTGGAGAAGATGGATCCCGTGGAGGTGTTTGCGGCCGGGGAGAAAGGCCGCGGCCTCAGGGTCACTAAAGAGCTGTCGTCTGGAGAAGTGGTGTTCGCCGAGGCCAGCTTCGCCGCGGTCGTGTTCGACAGcctCTCTCTGCAGGTGTGTCACAGCTGTTTCCGGCGTCAGGTGACCCCTCACCGCTGTGCTCAGTGTAAGTTCGCACACTATTGTGATCGTACGTGTCAGCGCGCCGCCTGGGACGAACACAAGCAGGAGTGCTCCGCCATCAGGAAGACAGGGACAGCGCCCAATGAGAACGTGCGCCTGGTGGCTCGGATCCTGTGGCGTATTCAGAAGGACACGGGCCTGGTCTCTGACGCTCAGCTCACGACCCTTGACCTCCTGGAGGATCACCTGTCCAAAACGTCCCCCGAAGACCTGAAAGAGCTCAAAGTGGATGTGCAGAACTTCTACAACTACTGGCCTAAAAAGAGCAAACCCGTGGGAGAGGACTACGTGGCGCATCTCCTCGGCGTGATCAACTGCAATGGCTTCACGCTGAGTGACCAGAGGGGTCTGCAGGCCGTGGGCGTGGGGCTCTTCCCTAACCTGTGTCTGGTCAACCACGACTGCTGGCCTAACTGCACCGTCATCCTCAACCCTGGCAATCAGACGGCTCTGGACGCCTCGCTGCACTCCACGAGGAGGATCGAGCTGAGGGCTCTGGAGAAGATCTCTGAAGGAGAAGAGCTGACCATCAGCTACGTGGACTTCCTCAACGTCTCCAAGGAGCGCCAGCAGCTGCTCAAGAAGAGGTATTACTTCGACTGTAAGTGTGAGCACTGCTCGAGCGCCACCGAAGACCAGCTGATGACGGCCGTCAGAGACAGCGACGGGAACAAGccgTCTGCTGACGTGGTGAAGGCAGTGACAGATTTCAGTCTTCAGGCTCTGGTTAAGATCGAAGAGGCTCGTACTGAAGGAAACTTCCAGGAGGTGGTGAAGCTCTGCCGTGAGTGTCTGGAGAAGCAGGGTCCTGTGTTTGGAGACACAAACCTTCATCTGCTGCGCGTCCTCAGCATCGCCAGCGAGGTCCTGTCCTTCATGCATCAGTTCAGCGAAGCGTCGGGATACACCCAGCGTGTTCTGGACGGATACACGAAACTCTATCATCCCAATAACGCTCAGCTGGGCATGGCCATGATGAGAGCGGGCGTCACACACTGGCACGCCGGACAGATCGAGAGCGCTCACTCGCTGGTCTGCCGCGCTTACGCCATCCTCATCATCACACACGGAGCTCATCACCCCATCACCAAAGACCTGGAGgcgaTGCGGACGCAGACGGAGATGGAGCTGCGCTTGTTCAAGCAGAACGAGCCGGTCTATCGCAGCATGAGAGAAGCTGTGCTCAGCGACAAGCCTCTGATGATGTCTGGAGAACCAATCAAAGCCTCCTcatgaagagtgtgtgtgtgtgtgtgtgtgtgt

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250690.1 lncRNA downstream 85628 17828586 ~ 17829943 (-) True LOC122343170
TU43617 lncRNA downstream 91307 17823423 ~ 17824264 (-) True G29445
TU43619 lncRNA downstream 91833 17823219 ~ 17823738 (-) False G29445
TU43620 lncRNA downstream 91833 17823287 ~ 17823738 (-) False G29445
TU43613 lncRNA downstream 93101 17820760 ~ 17822470 (-) True G29442
TU43679 lncRNA upstream 58316 17985013 ~ 17985818 (-) True G29487
TU43946 lncRNA upstream 454293 18380990 ~ 18409895 (-) True G29656
TU43953 lncRNA upstream 508948 18435645 ~ 18465837 (-) True G29662
TU43954 lncRNA upstream 509870 18436567 ~ 18461313 (-) True G29663
TU43984 lncRNA upstream 629803 18556500 ~ 18558268 (-) False G29680
XM_043237286.1 mRNA downstream 3139 17903576 ~ 17912432 (-) True thnsl2
XM_043237244.1 mRNA downstream 16704 17884719 ~ 17898867 (-) True dqx1
XM_043237242.1 mRNA downstream 34775 17861583 ~ 17880796 (-) False LOC122342984
XM_043237240.1 mRNA downstream 34975 17854701 ~ 17880596 (-) True LOC122342984
XM_043237241.1 mRNA downstream 35094 17854701 ~ 17880477 (-) False LOC122342984
XM_043237427.1 mRNA upstream 1090 17927787 ~ 17932419 (-) True spra
XM_043237477.1 mRNA upstream 36892 17963589 ~ 17969568 (-) True rab14l
XM_043237295.1 mRNA upstream 101801 18028498 ~ 18041948 (-) True tbx5a
XM_043237255.1 mRNA upstream 132628 18059325 ~ 18067165 (-) True tbx3a
XM_043237256.1 mRNA upstream 132628 18059325 ~ 18067162 (-) False tbx3a
TU43577 other downstream 179297 17735350 ~ 17736274 (-) True G29417
TU43541 other downstream 276862 17637159 ~ 17638709 (-) False srd5a3
TU43209 other downstream 793442 17118628 ~ 17122129 (-) True xrcc3
TU43174 other downstream 897748 17006927 ~ 17017823 (-) True G29135
XR_006250655.1 other downstream 1015276 16886974 ~ 16900295 (-) True prkchb
TU43653 other upstream 43908 17970605 ~ 17979922 (-) True G29473
TU43941 other upstream 481863 18408560 ~ 18428343 (-) True G29653
XR_006250671.1 other upstream 730283 18656980 ~ 18661653 (-) True LOC122343054
XR_006250670.1 other upstream 730283 18656980 ~ 18661649 (-) False LOC122343054
TU44045 other upstream 798128 18724825 ~ 18735640 (-) False LOC122342944

Expression Profile