RNA id: XM_043237306.1


Basic Information

Item Value
RNA id XM_043237306.1
length 2292
RNA type mRNA
GC content 0.55
exon number 11
gene id LOC122343028
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24454270 ~ 24466400 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCGTCATCAGTCGCTGAATGTCGATGAAAAGCGGAGAAAGTCAGGCTCTCGTCGACAGACCCGGACCGGAGCGCTCTCAGGTGAGGATAAACCCCGGTCTGAACTTCCGGCGCGGTCTGTGGAAACTTTTCCGGACGCTTCCGCCGCTGATCGCGGAGCCGCTCGAGCGATCTTTCGCGCTTGTCCGTCAGTCAGGACGCGCTTTAACCTGATTCTTCCTCACTTTCGTAAACGCACCGTTGTTTTCTGCCGACGTCCTCGCTGACTTTCAGCCATGTCAGACCTGACCGACTCTCTGGTGGACGTGTCCAGCGACAGCTTCTGGGAGGTGGGGAACTACAAGCGTGCGGTGAAGCGCGTGGACGACGGGAACCGGCTGTGTAACGACCTCATCAACTGTCTGCACGAGCGAGCCCGCATCGAGAAGAGCTACGCCTCGCAGCTCACTGAGTGGGCCAGACGCTGGAGACAGCTGGTGGAGAAAgGGCCTCAGTACGGCACGGCGGAGCGGGCGTGGTTCGCTCTGATGACGGAGGCCGAGAAAGTGAGCGACCTGCACATGGAGGTGAAGGCTGCGCTGATGGGAGAAGACTTGGAGAAAGTCAAGAACTGGCAGAAGGACGCTTACCACAAGCAGATGATCGGCGGCTTCAAGGAGACCAAAGAAGCCGACGATGGCTTTCGCAAGGCGCAGAAGCCCTGGGCCAAGAAACTGAAGGAGGTGGATGCCATGAAGAAGGCCTACCACAACGCCTGCAAGGAGGAGAAGACGGCCAGCAGCCGAGAGAGCTCGAGCAAGCTGGACAATAACAACCCCGAGGCCCAGAAGAAGCTGCAGGAGAAAGTGGAGAAGTGCCAGCAGGAAGTTCAGAAGACGAAGGAGCGCTACAGGAAGTCCCTGGAGGAGCTGGACAAGGTGACCCCTCAGTACATGGAGAACATGGAGCAGGTGTTCGAGCAGTGGCAGCAGTTCGAGGACAAGAGACTGCGCTTCTTCAGAGACCTGCTGCTGGGCGTCAAGCAGCACCTCGACCTCTCCTCCAATCACAAGTACGCCACCGTCTATCACACGCTGGAAGACACGGTGCGGGCGGCCGACGCTCAGGAGGACCTCCGGTGGTTCCGCTCCAACCACGGGCCCGGCATGGCCATGAACTGGCCTCAGTTTGAGgAATGGTCCATGGACTTGAACCGAACGCTCAGTCGACGAGAAACCAAGAGGAAACACAACGATGGAGTGACTCTGACGGGGATCAGTCAGACCACAGAACACACCTCGAAAACcagcagcagCGTGGCTGTGGCCAGTAGCTCAGAAGCCGCATGCTTGAACCcgtttgatgatgatgatgatgatgatggtggtgaggATGATGGTGGTGAGgtggaggaggatgaggaagagccGGCGGCGGAGCGGCCCAAGAGCAGCCCGCTGGCTGTCAAACGAGAGGAAGTGACCTCACAAACCGCTAACGGGAACCCGTTCGAGGACGAGGCGAGCGCTGCGGAGCTGTGTGTGCCGGTGCGGGCGCTGTACGACTACGAGGGGCAGGAGCAGGACGAGCTCAGCTTCAGAGCAGgcgaTCAGCTGATGAAGATGAGCGAGGAGGACGAGCAGGGCTGGTGTAAGGGGCGTCTGAGCGACGGCACGCTCGGACTCTACCCCGCAAACTACGTGGAGGACCTGGAGTGAGCCGCTTTTAAGAGTTTTACCAGCGCTGTGTGCTTTTAGGACCCTGATTTTATGACCCCGgagctgacctctgacccctgcgGCTCCGCCGGATCTGGACGTGCACTGGACGACATGCTGTAGAGACACGCCTCATGTAGATctagcgcgtgtgtgtgtgtgtgtgtgtgtgtgagagagagatcatCAGAATGTTACGGCTCatgaatgttaatgtaaatatgaatcTGACGCCCGAGTCCGGTTCCTCTCAGGTGTCCCGCGTTAATacagtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcttcacaTTTGTTCAGCGCTGAAATGGTTTGAGTTGAATATCTCTGTTCACGTCACAAACTCAGTTACACACTTTGAGAGttcagtcactttttttttataatgaattggTTACATTTTCTTGAtttcttctgtttaaaatatatatataaatataaatatatacaactcattttgtttctttttcaaatcattttctcACGTTTGACAACagttgatatt

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function

KEGG:

id description
K20123 PACSIN; protein kinase C and casein kinase substrate in neurons protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250692.1 lncRNA upstream 34757 24417843 ~ 24419568 (+) True LOC122343172
TU45595 lncRNA upstream 140037 24310339 ~ 24314288 (+) True G30819
TU45594 lncRNA upstream 140037 24313194 ~ 24314288 (+) False G30819
TU45514 lncRNA upstream 444434 24003642 ~ 24009891 (+) True G30754
TU45513 lncRNA upstream 444541 24003642 ~ 24009784 (+) False G30754
XR_006250675.1 lncRNA downstream 171448 24636352 ~ 24638266 (+) False LOC122343159
TU45650 lncRNA downstream 171460 24636364 ~ 24638654 (+) True LOC122343159
TU45666 lncRNA downstream 208063 24672967 ~ 24673594 (+) False LOC122343086
TU45676 lncRNA downstream 249793 24714697 ~ 24714998 (+) True G30877
TU46134 lncRNA downstream 523963 24988867 ~ 24989274 (+) True G31223
XM_043237342.1 mRNA upstream 1117 24449021 ~ 24453208 (+) True ttll1
XM_043237359.1 mRNA upstream 20499 24427508 ~ 24433826 (+) True LOC122343053
XM_043236129.1 mRNA upstream 39099 24414458 ~ 24415226 (+) True LOC122342343
XM_043236127.1 mRNA upstream 132187 24319640 ~ 24322138 (+) True LOC122342339
XM_043237469.1 mRNA upstream 141578 24309427 ~ 24312747 (+) True LOC122343118
XM_043237296.1 mRNA downstream 550 24465454 ~ 24471450 (+) True LOC122343023
XM_043237298.1 mRNA downstream 550 24465454 ~ 24471450 (+) False LOC122343023
XM_043237299.1 mRNA downstream 550 24465454 ~ 24471450 (+) False LOC122343023
XM_043237416.1 mRNA downstream 7103 24472007 ~ 24475294 (+) True LOC122343091
XM_043237415.1 mRNA downstream 7117 24472021 ~ 24476783 (+) False LOC122343091
XR_006250666.1 other upstream 312914 24133050 ~ 24141411 (+) False LOC122342990
XR_006250665.1 other upstream 331505 24117289 ~ 24122820 (+) False LOC122342976
TU45341 other upstream 1287068 23163769 ~ 23167257 (+) False LOC122342321
TU45342 other upstream 1287068 23163769 ~ 23167257 (+) False LOC122342321
TU45351 other upstream 1294569 23157559 ~ 23159756 (+) True G30632
XR_006250668.1 other downstream 550 24465454 ~ 24470867 (+) False LOC122343023
TU45649 other downstream 171460 24636364 ~ 24638654 (+) False LOC122343159
TU45653 other downstream 175225 24640129 ~ 24646571 (+) True LOC122343125
TU45681 other downstream 256520 24721424 ~ 24728447 (+) True G30882
XR_006250558.1 other downstream 278944 24743848 ~ 24767552 (+) False LOC122342408

Expression Profile