RNA id: XM_043237330.1


Basic Information

Item Value
RNA id XM_043237330.1
length 2156
RNA type mRNA
GC content 0.41
exon number 9
gene id LOC122343036
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21655902 ~ 21662833 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tcatgtgtcttgtgaaccctGGCTCTGCCAGGCTTTCGATCAGATGTGGATTGGCTAAATAACGCCTTTACTGTTATGTGCAATTTATCCCAGGTATGATTTTTGCGTGGTTACAATATCATGATTatggttaaataataaaaataagatcatcgttaaataagttatttaaatatcataaccaaattaggctacatttatattaatatgaaatatttcagcACATCAGATATAATCACAATTTCTATACATTATAGTAAAAAGACTTTatagaaaaatgttaaactataaattttaaaagttttaaaaatgtaacaatataataaCCTCAGAGGTAATTGGAGGTGAAAAACAATGTCACGTGGCGTGGTTGTAGTAATACGTCTTAAAGgatataacaaaaattattcttttaatacaGGAACTCAGCATCAACACACATAGAACATTTAATATGTTAAGGACCGCCAAGGGAGAACGCAACAGACAGGGTGTAAAAGCACAGGGACATAATTGGGAGAACAAAAACAGGTATTGTCATGGCAATCCAGCACAATACAAGTGAAATCCAAAACCGAAAGTATTTCTGTCAGGTTTCTCTGTGGTTCAGTCATGTGCACAAGCAGAAgactttctgtttctgtttgacCTGACTGGGACCTGAAGTCACGATTTTGACATTCTGTACGAGGGCAAGATGACAGATGAACTCATTGCAATAGAGTCGGACCTCATCGAGTTCGATGAGGACATGGAAGAACTGTCGGCACCTGAGTTTGTGTGTCACTGTTGCTACGATGTCCTCGTAGATCCTACTACGCTTAACTGTGGCCATAGTTTTTGTCGCCATTGTCTGGCAGAATGGTTGCATTCCTCTCAACGGAACGAGTGTCCAGAATGCAGAGAGAGGTGGCAGGGCTTTCCCAGAATTAACATCCTCCTTCGGGATGCAGCGGAGAAGAAGTTTCCAGATAAGATAAAGAGACGGAGGACGGCTCTCCAGAGTGACCAACGGTTCCATTATTTTCTCCAGATATTCCAAAAGTATGGGCAGGTACTGAAGCAACAAATTCCTGTATCACAAGGCCTAGAACAAGCTATACAATACAGCTTTTGTTCTGGAGTCATGGTGGCATTGATGTGCATGGGGGTTATATTGTTTCGATATTACTGGGTCAGCACTGAATCCGATTATGACATCTTGGTTCAGAAGCCAATCAACAGGTGGAAACCCCATGATGTCATTCTGTGGGTGGAGCATCTGGGTCCCTGGAGCAATCAGTACAGAGAAACGTTCCacaaagcacaaattaatgGAAGtttcttgGCTCATCTCAGGGATGAAGAACTGTCTGCTTTTCCGTTTCATGTTAAGAATCCATCGCACAGACAGGTCATTCTGGAGGAAATCCGGAAAATCAAAGACCACAAAGTCAAACTACCCCAAAACCTCTGGGAGTACAAGGCTGCAAATTTAGGAAAATCGCTGTTCCTCCAGTTTGGCCTGAGAGAATTTCCACGCGTCACTTTCCTCTACTTGTACCTGTTTGATTATGAAGACACCTTTCTACCCTTCATACACACCTGCTGTCCTGCATACATAACGAATGCAATGCAGGATATCCCACCTGACCACGTACCGcaGGAGCCAAGCCAACGTCAGTGGGTGGAGTTTCGTGTGAAGGTTTGTCTGATGCCCTATCTGCTACTGGTTGACTTTGCTTGGCAATGGCTGAGCGTTCATTGCTGGATATCATGGATTGTGATTGGTAATTCCATGGTGATGTCAGTAATGGAGTATGTTTATGTCTGGACACTGTGGAGAAGAAGACAGATGAGAACTCTTCCTAAGACGATTCTTCAGAAGACGCTCAATATGTTCTTCGTTGTGCTGCTGTGGCCCCTGATGCCTCAGTTCTTCTGTGACTTTGAATTCTACTGCGGACTCTTTTTCAGCTCGTTCATTTATATCTCTGTTCGGAAACCTTTTCTTAAGCTGGCACAGGAATAAAGACCTAAATacgttaagatttttttttcttacaacaGCACAATTACTATTTCTGTTCCAAAATACACATGCTTGAATGTAATGCATCTCtatttagaaatcttttttaaagCAGGTACAGCAATAAACATctaaacaaattaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45029 lncRNA downstream 155904 21499638 ~ 21499998 (-) True G30408
TU45027 lncRNA downstream 162995 21492264 ~ 21492907 (-) True G30406
TU44981 lncRNA downstream 376859 21276222 ~ 21279043 (-) True LOC122343113
TU44930 lncRNA downstream 529831 21117815 ~ 21126071 (-) True G30343
TU44875 lncRNA downstream 587714 21065914 ~ 21068188 (-) True G30301
XR_006250701.1 lncRNA upstream 5981 21668810 ~ 21673424 (-) False LOC122343179
XR_006250700.1 lncRNA upstream 5981 21668810 ~ 21673424 (-) True LOC122343179
TU45062 lncRNA upstream 10894 21673723 ~ 21676131 (-) True G30425
TU45059 lncRNA upstream 14047 21676876 ~ 21809618 (-) True G30423
TU45070 lncRNA upstream 106750 21769579 ~ 21772200 (-) False LOC122342302
XM_043237426.1 mRNA downstream 1905 21651364 ~ 21653997 (-) False LOC122343099
XM_043237425.1 mRNA downstream 1976 21651364 ~ 21653926 (-) True LOC122343099
XM_043236094.1 mRNA downstream 25744 21629480 ~ 21630158 (-) True LOC122342299
XM_043237341.1 mRNA downstream 113613 21537322 ~ 21542289 (-) True LOC122343039
XM_043237212.1 mRNA downstream 126956 21517473 ~ 21528946 (-) True LOC122342973
XM_043236095.1 mRNA upstream 51850 21714679 ~ 21736541 (-) True LOC122342300
XM_043236098.1 mRNA upstream 106295 21769124 ~ 21772399 (-) True LOC122342302
XM_043236099.1 mRNA upstream 112269 21775098 ~ 21780619 (-) True LOC122342303
XM_043236101.1 mRNA upstream 184291 21847120 ~ 21860284 (-) True LOC122342306
XM_043237440.1 mRNA upstream 207586 21870415 ~ 21878772 (-) False LOC122343106
TU45006 other downstream 269465 21383469 ~ 21386437 (-) True G30395
TU45009 other downstream 269924 21383469 ~ 21385978 (-) False G30395
TU44972 other downstream 325809 21327716 ~ 21330093 (-) True LOC122343135
TU44338 other downstream 1373502 20281106 ~ 20282400 (-) True G29906
TU44333 other downstream 1417348 20237137 ~ 20238554 (-) True G29902
TU44977 other upstream 74262 21737091 ~ 21740330 (-) True G30372
TU45110 other upstream 465625 22128454 ~ 22245160 (-) True G30450
TU45123 other upstream 553206 22216035 ~ 22216470 (-) True G30457
TU45768 other upstream 1772151 23434980 ~ 23437015 (-) False LOC122342328
TU45855 other upstream 1834300 23497129 ~ 23546369 (-) False G31017

Expression Profile