RNA id: XM_043237336.1


Basic Information

Item Value
RNA id XM_043237336.1
length 1674
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC122343037
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18950727 ~ 18953599 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTAACGCTTACTATGATACTGTTTGTTTGCGACGTGAAGCTCATTGGTCGCTATTGAATGCAATTCGGTCGCTGGCGAGTGATGAAGAAACCGAGTCTTTTGGGGATCCGAGTCAGCTGAAACGATTCTCTGTTTTGAATCGCTCGAAACACAGAGGGATGAACTTTACATCAAACTGAAGCAGCTGAGATCGATGTGACACCGTTATAAAGATGGTGTTCATTAAACAGGAGAGTGAAGACGTTAAGATTGAAGAAACATTCACAGTCAAACATGAAGATACTGAGGAACAAGTAAAAATGGTGgttattaaagaggagagagaaggcATTAAGATTGAAGAAACGTTTGCAGTCAAACATGAAGATACTGAGGAACGAACAAAGATGGAGgttattaaagaggagagtgaagaaATGAAGACTGAAGAAACATTGACAGTCAAACATGAAGACACAgaggaacaaacagACCCGCTAGAAGAAAGAAGTGAAGAACTAAATGAAACGGAAGGCAAAGATCGGTTTAAGAAAGATTTTACTGGAGAACATCTTAGTTGCTCGCAATTACCTAAATGGACTTTAGAAAAGAAAGTAACTAGGAGTCACTTCGgttgccaacagtgtggaaagagttttaataaacaaagaaCCCTTAACATTCACTTAAGAACTCACACGGGAGAGAAACCTCACACCTGCTCTCGATGTGGACTGAGCTTCACTCAAAAAGGAACCCTTAACAGGCACATTAGAATTCACACCGAAGAGAAGACCTACTCCTGCAAACTGTGTGGAAGTAGTTTTATACAAAACGGAGACCTTAAAAACCATATGAGAATACACagcggagagaagccttacacctgcccacagtgtggaaagagtttctgTCAAAAAGGAAATCTCAAAGTCCACATGAGCGTTCACTCCGCAGAGAGACATTTCAGCTGCCAACTGTGTGGGAGAAGTTTTACCAAAAAAGAAAGCCTCGAAATCCATTTGAGAATCCACACTGGTGAGAAGCCCtacacctgccaacagtgtggaaagagtttctgTCAAAAAGGGAATCTCAAAGTCCACGTGAGCGCTCACGCTCGAGAGAGCGAATTCAGCTGCCGACAATGTGCAAAGCGTTTTACTAAAAAGGAAAGCCTTGATATCCATTTGAGAATCCACAACGGGGAGAAGCCTTACGCCTGCCAACAGTGTGCGAAAAGTTTCGTTAAAAAAGGGGCCCTCAATATGCACAACAGAATTCAtaccggagagaaaccttttGTCTGCCCTCAGTGTGGACTAGGTTTCACTCAAAAAGGAACCCTCAACAGCCACATTAGAAGTCAtactggagagaaaccttacgCCTGCAAACTGTGTGGAAGTAGTTTTACTCGAAAAGGACGCCTCAAAACCCATGTGAGATGTCATGCTGTATGCCTTTTACCTTCCagcagtgtggaaagagttaaCAAGGAAACTTCGAAGTCCACATTAGTGGGAGATTTCAGCTGCTAATCAAAATGTTTCGCTAAAAAGGGAAACCTTGAAACCTCAAGTTCTCAATAGAGAAAATCCGTTCATATTCACATGAGTGTTCACAATGAAATCCAAAACATCCCTTGATGTGActgtttaaattcagttttcaaTAAATGAGCTGCTCTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44148 lncRNA upstream 18234 18932319 ~ 18932690 (+) True G29777
XR_006250682.1 lncRNA upstream 43100 18903235 ~ 18907824 (+) True LOC122343164
TU43902 lncRNA upstream 135646 18814883 ~ 18815278 (+) True G29633
TU43888 lncRNA upstream 165678 18785045 ~ 18785246 (+) True G29627
TU43851 lncRNA upstream 285841 18662860 ~ 18665083 (+) True G29600
TU44169 lncRNA downstream 13788 18967387 ~ 18967714 (+) True G29797
TU44175 lncRNA downstream 92111 19045710 ~ 19053414 (+) True G29803
TU44189 lncRNA downstream 126169 19079768 ~ 19080189 (+) True G29809
XR_006250695.1 lncRNA downstream 416172 19369771 ~ 19371889 (+) True LOC122343175
XR_006250711.1 lncRNA downstream 452304 19405903 ~ 19406459 (+) True LOC122343189
XM_043237417.1 mRNA upstream 13259 18933707 ~ 18937665 (+) True LOC122343092
XM_043237355.1 mRNA upstream 28414 18918600 ~ 18922510 (+) False LOC122343048
XM_043237353.1 mRNA upstream 28414 18918644 ~ 18922510 (+) True LOC122343048
XM_043237354.1 mRNA upstream 28414 18918644 ~ 18922510 (+) False LOC122343048
XM_043237213.1 mRNA upstream 35902 18908916 ~ 18915022 (+) True LOC122342974
XM_043236046.1 mRNA downstream 7063 18960662 ~ 18962974 (+) True LOC122342236
XM_043236049.1 mRNA downstream 110426 19064025 ~ 19067883 (+) True LOC122342238
XM_043236050.1 mRNA downstream 193402 19147001 ~ 19150635 (+) True LOC122342239
XM_043236051.1 mRNA downstream 311756 19265355 ~ 19268050 (+) True LOC122342242
XM_043236055.1 mRNA downstream 491962 19445561 ~ 19449833 (+) True LOC122342246
TU43926 other upstream 64522 18883179 ~ 18886402 (+) True G29642
TU43756 other upstream 489607 18436460 ~ 18461317 (+) True G29545
TU43729 other upstream 649735 18300415 ~ 18301189 (+) True G29526
TU42966 other upstream 2476543 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 2965198 15985219 ~ 15985726 (+) True G28899
TU44195 other downstream 336621 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 777663 19731262 ~ 19786128 (+) False G29835
TU44230 other downstream 792142 19745741 ~ 19747442 (+) False LOC122343071
TU44267 other downstream 1084339 20037938 ~ 20040195 (+) False LOC122343063
unassigned_transcript_309 other downstream 1109055 20062654 ~ 20062727 (+) True trnam-cau_2

Expression Profile