RNA id: XM_043237341.1


Basic Information

Item Value
RNA id XM_043237341.1
length 1960
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC122343039
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21537322 ~ 21542289 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGACAAAGAACAACTCTATTAAAAGATggcgtttattaaagaggagagggAAGACGTGAGCATCGATGAAACGTTTAGAGACAAACATGAAGAAACTGAAgaacaaacagACCTGATGGCACTAAAAGAGGAGTGTGAAGTACTGAATGAAATAGACGAGAAAGACCATGATTTAATAACTGGAGAAACATTTAGCTGTTCAAAGACTCAAAAGACTTTAAGGAAAAGGACTCAAAAGACAGGAAGAAGTCAGCAtttcacctgccaacagtgtggaaagagtttcagtcaAACAGGGGGTTTTAAAAGacacatgagagttcacactggagagaagccttataTCTGCCAACACTGTGGACAGAGTTTCAGTTTAAAAGGAAACCTTAACAGACACATGAGAGTTCACTATGGAGAGAATGCTTACACCTGCTGTCGGTGTGGAACAAGTTTTGATCAACATGAAAACCTTGAAGCCCACATGAGAACTCATACAAAGAAACTATACACATGCCCTCACTGTGGAAAGAGTTTCCGTCGAAAACTACGCTTTGAAAGCCATATGAAAAAACACTCTGGAAAGCAATCCTACACATGTCCTCAGTGCGGAAAGAAGTTTAGTCATAAAGGACGCTTAGAAGACCACATAAGAATCCACACAGGAGAGAAGCCTTTTTcttgccaacagtgtggaagaAGTTTCAACCAAAAAGGAAATCTTGACAGACACATGAgtgttcacactggagagaagccttacacctgccaacagtgtggaagaGGTTTCAACCGGAAAGAAAACCTTAACTCCCACATAACCGTTCACACTGGAAAAAATCTTTTCACCTGTCAACAGTGTGGAATAAGttttactgaaaatgaaatCTTTACCAGACACGTGagaattcacactggagagCAGCTTCACACGTGtgatcagtgtggaaagagttttgatCAACATGAAAGTCTTGAAGTCCACATGAGAACTCATAGAGAGAAACCCTACATGTGTTCtgagtgtggaaagagtttctgCCAAAAACAACAGTTTGAACACCACATGAGACTTCACTCTGGAGAGCAACCCTACACATGTCCTCAGTGCGGAAAGGGGTTTAATCATAAACGACACTTGGAAGATCACATAAGaactcacaccggagagaagcctttcacttgccaacagtgtggaagaCATTTTAGCCAAAAAGGAAGCCTTAAAAGGCACATAGATCGTCACAATGGAGAGAAGCAATTTACATGTGGTCACTGCGGAAAGAGTttcaaaaataaagcagcatgTAATCACCACATGAGGTTTCACATATGAGAGAGAACTGTGTTGATAAATGAACAGTGTGACATGGGTCTTGTAATAACACCAGAGTGAAGCCTTTGCTCtgccatcattgtggaaagaCTTGCAGAAACAAGACACTCTTGAGGTTCACAGAAGCACCATTGATATAATTCAAAACAGCCATGGGTTTATTTTCAcctgtgtttaaaatgtgttttgattgaTAGGATCTCAAATTCAGACTGTTCCTGTATCCCTGTCTCTTTTGTCCACTTTCGACCACTTCTGTCCCAGTTTTGTCAAGGAAAGAGTAAATGCATGGGATCTTTCACATGTTGTGGTCAAGTGAATGAAACAAGTCTGttaaatttttacatataaatgtgaGTGAGTTGAAAGATTACAACTAAACTACAATATGTCACTGCCTTATTTATGTACTTGATAATTAAGTAAGGAATAATTGACTCAAAGTGGCTGTTACAccttgtgtttaatttttttaataattcaacggTACGGAGTAATTTTCTTTCTGCATCTCGTCTATGTGAATTATCTCCAAGTTTATGCAAATTAACATATGTTGTCAATTAGCGACTTTTCAAGTTGGCTTTAGGTACTTTCCATTAAAAGATGTTGGCAACACTGCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45029 lncRNA downstream 37324 21499638 ~ 21499998 (-) True G30408
TU45027 lncRNA downstream 44415 21492264 ~ 21492907 (-) True G30406
TU44981 lncRNA downstream 258279 21276222 ~ 21279043 (-) True LOC122343113
TU44930 lncRNA downstream 411251 21117815 ~ 21126071 (-) True G30343
TU44875 lncRNA downstream 469134 21065914 ~ 21068188 (-) True G30301
XR_006250701.1 lncRNA upstream 126521 21668810 ~ 21673424 (-) False LOC122343179
XR_006250700.1 lncRNA upstream 126521 21668810 ~ 21673424 (-) True LOC122343179
TU45062 lncRNA upstream 131434 21673723 ~ 21676131 (-) True G30425
TU45059 lncRNA upstream 134587 21676876 ~ 21809618 (-) True G30423
TU45070 lncRNA upstream 227290 21769579 ~ 21772200 (-) False LOC122342302
XM_043237212.1 mRNA downstream 8376 21517473 ~ 21528946 (-) True LOC122342973
XM_043236092.1 mRNA downstream 42093 21487205 ~ 21495229 (-) True LOC122342296
XM_043237304.1 mRNA downstream 50117 21484781 ~ 21487205 (-) True LOC122343027
XM_043237508.1 mRNA downstream 140417 21387853 ~ 21396905 (-) True LOC122343153
XM_043236089.1 mRNA downstream 154131 21381792 ~ 21383191 (-) True LOC122342292
XM_043236094.1 mRNA upstream 87191 21629480 ~ 21630158 (-) True LOC122342299
XM_043237426.1 mRNA upstream 109075 21651364 ~ 21653997 (-) False LOC122343099
XM_043237425.1 mRNA upstream 109075 21651364 ~ 21653926 (-) True LOC122343099
XM_043237332.1 mRNA upstream 113613 21655902 ~ 21662833 (-) False LOC122343036
XM_043237331.1 mRNA upstream 113613 21655902 ~ 21662833 (-) True LOC122343036
TU45006 other downstream 150885 21383469 ~ 21386437 (-) True G30395
TU45009 other downstream 151344 21383469 ~ 21385978 (-) False G30395
TU44972 other downstream 207229 21327716 ~ 21330093 (-) True LOC122343135
TU44338 other downstream 1254922 20281106 ~ 20282400 (-) True G29906
TU44333 other downstream 1298768 20237137 ~ 20238554 (-) True G29902
TU45011 other upstream 87328 21629617 ~ 21776806 (-) True G30396
TU44977 other upstream 194802 21737091 ~ 21740330 (-) True G30372
TU45110 other upstream 586165 22128454 ~ 22245160 (-) True G30450
TU45123 other upstream 673746 22216035 ~ 22216470 (-) True G30457
TU45768 other upstream 1892691 23434980 ~ 23437015 (-) False LOC122342328

Expression Profile