RNA id: XM_043237344.1


Basic Information

Item Value
RNA id XM_043237344.1
length 1559
RNA type mRNA
GC content 0.52
exon number 4
gene id LOC122343041
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 22105236 ~ 22107457 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aagatttaaaatgccCGTGTTGTagatattaatgtaaaataaacatgctttcCTTCGATGCAGGTGAAAAACCGTTCAGATGCAGTGTCTGTGGCAAGGGTTTTACCCAGAAACACACTCTTTTGGTTCATCAGCGCATGCATACGGGAGAAAAGCCCTTCATCTGCACTATATGCTCCAAAGCGCTGTCCACGAAACATTCTCTGCTGGAGCACATGAACCTGCACACAGAGAAAAAGTCATTCGGTTGTGAACAGTGTGGCAAAAGCTTCAGTCAGAAGCGGCAGCTGAAAAGCCATCACCGCATTCACACAGGAAAAGCGCTGCCCGAGTGCGCGCACTGCCATCATAAGTTCATGGATGCAGCTCAGCTGAAGAAGCACCTGAGAACTCATACCGGAGAGAAGCCGTTCACGTGTGAGATCTGCGGGAAGTGCTTCACAGCCAAGAGCACACTGCAGACGCACATCAGGATACACAGAGGAGAAAAGCCGTACAACTGCAACATCTGCGATAAGACCTTCTCCGACCCCAGTGCCAGGAGGCGTCACGTGGCGTCTCACACGGGGAAAAAGCCGTTCATGTGTTCCATCTGCAGCTTGTCGTTTGCCCGAATGGACAACCTTAAAGCTCACACCAAGACTCACAACAAGGAGCGCCAACAAGGAGAAGCCGAGACCACGGGGCCTGCGCCGGTGGAGGCCGCTTCAGGGCCTGATGAGATGCACAGCATCCTCCAGCTCCAGCCGTACCAGCTTCCCGCCCAACCCGAGCAGGAGATCCAGCTGGTGGTGACCGGCGAGGTGGACGACATCAACCTGGGCCAGGATCAAAGCATCAGCATCATCGCGGCAGAAGATGCTTCCGTGGAGCAGGGCCTCACGCTTCTCACCCAGCCTTCCGGTCACGTCCAAAACCTGGCGCTGGTCACGCCTGACGGGTTAGACGCCGGCGCTCAAATCCAAACCATCAGCGTTTTAGGAAGCCAGGTGAGCGGCGAACAGCCCGAGCAAATGCACGTCATCACGCTGACCAAAGAAGCCATGGAGCAGCTGCGGGTTCATCACGGAGGTTCTCAGCAGCTGCAGGTGATCCACCAGCTGTCCGAGAGCGCTGCTGAAAATCCCAGACGGACGGGGCCCGCGGGAGGCATTCACATCAGCAGCCAGAGCGGCCAGCCTATCTCCATCAGCCAGACCAGCGAGCAGATCCCCAGCGATCAGATCCAGGGCCAGACCTTCCAGATCCAGGCTGGGACGGTCTCGTACCTCTACACCACCAGCATGAACCCGCAGAACTGAACATCCATAATGCTGACGCTTGGTCTCTTTTGTTGTGTAAATAgttgtgttttaatgttaaagctGATTTCGTTGAGAAGGAATCTGATATATGATTACACTGTGACTTTTTCATAAAGCAGAGCCATACCTAATGTTTGTTATTAAAGAGTTGCTGTTTGTAAAAAAGAACAATGGTTATGCTTATTCTCCTTTTGTTGTAAATGgttatatttttgtacttgTTAAGGAGACAAAAGACAATAAATGGTTCGTGTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44657 lncRNA upstream 293952 21749010 ~ 21811284 (+) True G30130
TU44664 lncRNA upstream 578225 21485712 ~ 21527011 (+) True G30133
TU44661 lncRNA upstream 582983 21479557 ~ 21522253 (+) True G30132
TU44748 lncRNA downstream 33887 22141344 ~ 22255433 (+) True G30205
TU44753 lncRNA downstream 55181 22162638 ~ 22240294 (+) True G30206
TU44760 lncRNA downstream 67498 22174955 ~ 22252519 (+) True G30212
TU44775 lncRNA downstream 142978 22250435 ~ 22251792 (+) True G30226
TU44782 lncRNA downstream 166354 22273811 ~ 22280970 (+) True G30233
XM_043237385.1 mRNA upstream 304 22103318 ~ 22104932 (+) True LOC122343067
XM_043236100.1 mRNA upstream 263006 21841181 ~ 21842230 (+) True LOC122342305
XM_043237329.1 mRNA upstream 290799 21809156 ~ 21814437 (+) True LOC122343035
XM_043237294.1 mRNA upstream 296157 21673802 ~ 21809079 (+) False LOC122343020
XM_043236103.1 mRNA downstream 189440 22296897 ~ 22305148 (+) True LOC122342310
XM_043236104.1 mRNA downstream 296596 22404053 ~ 22405822 (+) True LOC122342312
XM_043237291.1 mRNA downstream 326597 22434054 ~ 22446278 (+) False LOC122343018
XM_043237290.1 mRNA downstream 326602 22434059 ~ 22446278 (+) True LOC122343018
XM_043237494.1 mRNA downstream 441160 22548617 ~ 22561763 (+) True LOC122343138
TU44625 other upstream 344058 21368643 ~ 21761178 (+) False LOC122342301
TU44630 other upstream 463480 21639540 ~ 21641756 (+) True G30115
TU44637 other upstream 475116 21388193 ~ 21630120 (+) True G30119
TU44553 other upstream 934641 21169249 ~ 21170595 (+) False LOC122342286
TU44534 other upstream 962405 21118562 ~ 21142831 (+) True G30058
TU44767 other downstream 124013 22231470 ~ 22231924 (+) True G30218
TU44785 other downstream 189440 22296897 ~ 22301519 (+) False LOC122342310
XR_006250667.1 other downstream 554369 22661826 ~ 22682712 (+) False LOC122343019
TU45293 other downstream 670585 22778042 ~ 22779597 (+) False LOC122342317
TU45355 other downstream 1021649 23129106 ~ 23130189 (+) True G30636

Expression Profile