RNA id: XM_043237346.1



Basic Information


Item Value
RNA id XM_043237346.1
length 1870
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC122343042
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18579651 ~ 18583442 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CACGGAGAAACCCCTGTTGAAGCAGAGGAGAGATCCACGGCATGTTAAAAGATGGCTTTCATTAAAGAGGAGTGTGAGGACGTGAGGATCGAAGAAGCGTTTAGAGTCAAACGTGAAGATACGGAGAAAAAAACAGCACTCTGCTTAACAAGCTGATGCCGTGGATCGGATCGGAAATATTGGAGACAAAAGAAACTGTGCAGAGTGGTGAAAACCACTACCTTATTGTGTACAGGAAAGAACgACCTGATGACGCTGAAACAGGAGAATCACAAGCTTAATGAAATGGAGCAGAAATATCGGTATGAGAGACATCATGACCCTACGACTGAAGGAATAACCCAAAAGACTGAAAACACCTCCTCACAAAAAAGAGGTCAGAAGAAAGTAACCAAAAGGTGTTTCTCCTGCCAGGAGTGTGAAAAGAGTTTTGATCAATTTGCAAATCTTAAAGTCCACATgaggattcacaccggagagaaaccgttcaCCTGCCGAcagtgcggaaagagcttcAATGAAAAGGGAAACCTTAATGTCCACACAAGAGTCCACACCGGAGAAAGACctttcacctgccaacagtgtggaaaaagcTTCTCTCAAAGAGGAAACCTTAAAGTCCACATGAAAATTCACACCGGTGAGAGATCTTTTACCTGCCAGCAGTGCGGGAAGTGTTTcactgaaaaaggaaacctcaagGTCCACACGAGGACGCACACCGGAGAGAGTTCTTTCGCCTGCCAacagtgcggaaagagtttcGCTCAAAAAGGAAACCTTAAAAAGCACGTgaggattcacaccggagagaagccctacACCTGCAAAATATGTGAGAAGGGCTTCACGCGTGAGCTAGGCCTTAGTTACCACATGAACAGCCACACTGGAGATAAACCGTTCATGTGTGgtcagtgtgggaagagtttcacgCGTAAAGTGAACCTAGATACCCACATCagaatccacaccggagagacgCCCTTCGTGTGCGGTCAGTGCGGAAAGAAGTTTCGATGTAAAGAAAATCTTAACCAGCACGCGAGGGTTCACTCGAGGGAGAACTGCCTTAAGAACCGCTTAACGACTCGCGGTGCAAAGACTCCTTTCATGTGCCATCGTTGCGGAAagagttatataaataaaagaagccTTCGGGCGCACGTGAGGATCCACACTAGGAAGAGGTCTTTCGCGGGCCTTAAAATATATCGAAGAGGCCTGAAACATCATTCACAGATTCACCCTGGAGGAAAACGTTTTAATTGCAAACGGTCTCACTTACAGATACGCTTAAAAAGCCACACGGATGTGAGACTCTATCTGTGTTCCTTGTGTGGGAAGCGTTTTAAATGGCCTAGCGGTTTACTGTGGCACCGGAAAATACGTGTCTGCGTAAAATGAAGGGTACGCTCACAACACAGTTGAGCGTGGGCCAAATCTAATTTTCGACTTTTAAACGAGCGACGCCTCTACAACCATCACCCCGTTTTCCATCTCCAGTATTTATTTTCATCGAACCACTTTTTGCGTCGCCATTTTAAACTTCGAGGCGTCCTGTTTTCTCGTGTACACTTGAACTCATGTGGTCACCATCGCCTTTGGTAAACTTTCAGAGCCCGGGCGGCTGTGGTGGATGAACTCTAGCTCCTTTTGTACAGAAGCATCAATCCATTTCTCATGTTGATACTTTAgaatcaaaatatgaattaaacgTGTTGTGAAAtgcttagttttgtttttatttgattagcaAAGTACATGAAGAATAATGCTAAAACACTGGGtggaaatgtctttaaaaatccattgttttaatccatttttGTAGAGATATCAAAATTACAATTTCCACTTGAGATTT

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU43989 lncRNA downstream 15206 18563154 ~ 18564445 (-) True G29682
TU43983 lncRNA downstream 20370 18556624 ~ 18559281 (-) True G29680
TU43984 lncRNA downstream 21383 18556500 ~ 18558268 (-) False G29680
TU44075 lncRNA upstream 128797 18711748 ~ 18712103 (-) True G29720
XR_006250719.1 lncRNA upstream 154864 18737815 ~ 18740781 (-) True LOC122343197
TU44083 lncRNA upstream 161650 18744601 ~ 18747308 (-) True G29726
TU44096 lncRNA upstream 200654 18783605 ~ 18783915 (-) True G29736
TU44098 lncRNA upstream 203245 18786196 ~ 18786692 (-) True G29738
XM_043236043.1 mRNA downstream 648 18571705 ~ 18579003 (-) True LOC122342233
XM_043237356.1 mRNA downstream 7976 18568163 ~ 18571675 (-) True LOC122343050
XM_043237252.1 mRNA downstream 34998 18526006 ~ 18544653 (-) False ptprr
XM_043237251.1 mRNA downstream 34998 18526006 ~ 18544653 (-) True ptprr
XM_043236042.1 mRNA downstream 102892 18445452 ~ 18476759 (-) True LOC122342232
XM_043237348.1 mRNA upstream 4712 18587663 ~ 18591196 (-) True LOC122343043
XM_043237347.1 mRNA upstream 4713 18587664 ~ 18591387 (-) False LOC122343043
XM_043237172.1 mRNA upstream 11368 18594319 ~ 18604310 (-) True LOC122342949
XM_043237173.1 mRNA upstream 11378 18594329 ~ 18604310 (-) False LOC122342949
XM_043237360.1 mRNA upstream 72293 18655244 ~ 18661650 (-) False LOC122343054
TU43941 other downstream 151308 18408560 ~ 18428343 (-) True G29653
TU43653 other downstream 599729 17970605 ~ 17979922 (-) True G29473
TU43577 other downstream 843377 17735350 ~ 17736274 (-) True G29417
TU43541 other downstream 940942 17637159 ~ 17638709 (-) False srd5a3
TU43209 other downstream 1457522 17118628 ~ 17122129 (-) True xrcc3
XR_006250671.1 other upstream 74029 18656980 ~ 18661653 (-) True LOC122343054
XR_006250670.1 other upstream 74029 18656980 ~ 18661649 (-) False LOC122343054
TU44045 other upstream 141874 18724825 ~ 18735640 (-) False LOC122342944
TU44133 other upstream 317614 18900565 ~ 18902548 (-) False LOC122343082
XR_006250672.1 other upstream 333375 18916326 ~ 18917533 (-) True LOC122343130

Expression Profile


XM_043237346.1 Expression in all Baseline Samples

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XM_043237346.1 Expression in each Bioproject

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XM_043237346.1 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 5.
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