RNA id: XM_043237355.1


Basic Information

Item Value
RNA id XM_043237355.1
length 2264
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC122343048
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18918600 ~ 18922510 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACGCGTCGCGCTACCGCACCTGCGCTTTAAAAAGACACACTCGTTGATAGGAGGCTACCTGAGTCAAAGTGTCCAGATACTCCAGCTGAAACAAAAAGATCGATGCGACACGCTATTATAAAGATGGCGTTCATTAAAGAGGAGAGCAAAGACATGAGGATTGAAGAAGCGTTCACAGTAAAGCAAGAAGATAAtgaggaacaaacagatgCGACGGCGTTGAAAGAGGAGAGTCGAGATCCGAATGAAACGGTAGAGGAAGATCTGCATGAAAAACACGATTTCATATCTTTTGAAAAGGATCCAAAGACTGGAGCTCTGAGTCGTTTCATTTGCCAACATTGcggaaagattttaaaaaacagagaaaacctTAAAATCCATACCAGGATTCACACTGGGGAGAAGCCTTTTATCTGCCAagagtgcgggaagagcttcccGCGAAAAGATAATCTGAGAATTCACGTGAGGGTTCACACCGGGGAGAAACCTTACACCTGCCagcagtgtggaaagagtttcccGCGAAAAGATAACCTCAAGAttcacatgagaattcacaccggagagaaaccgttcaTATGTGGTCAATGCGGAAAGCGTTTCCCGCACAAAGCGACCTTTTACACCCACGTgagaattcacaccggagagaagccttacaccTGCCAACTGTGCGGGAAAACGGTGAACCGAAAAGGAAATCTTAAGGCTCATatgagagttcacaccggagagaagcctttcgcTTGTGAACGGTGTGGGAGACGTTTCGTACGCAAGGAAGGCCTCGGCAAGCACTTGGAGACGCACTCGAGTGAGAGCTCTTTTACGTGCCAGAGGTGCGGAAGGGCATTCACAGACGGCGGCCGCTTTAAGAGCCACGTACTCGCTCACATGGGGCAGGAGCCTTTCATGTGTCTTCACTGCGGGAAGACTCTCGCGAAAAAAGCAAACCTCAAGACTCACATGagaatccacaccggagagaagcctttcgcgtgtgatcagtgcgggaagagtttcagaCAGAAAACCACTCTTTATACtcacatgagagttcacaccgCAGAGAGGCCTGTTCGAATATGTATAGTGTGAGTTTCCCACGTCAGATCTGACGAGTTATTTGGGAAATCACTCTGGGAAAGGAGCACCCGTGCGCTCGGGAGAAAGTACGATGCTTGTAGGCTTTGGATTCGTATCCTGGCAaggatttctgtatttctttgGTTCAGAGTACCTCGAGATCGTCACGAACCCAAACGAAGCCATAACCTAGACATTTTAAGCAATGTAGAAACCCTGGCCAGGACACATCCGTGAAAAATGGCACGTATCTTATAGTCTTCGAAAAGGCCGTAACAGCATTATATTCTCTTTTAACAAGAAATCCGTAAAAGTCCTAAATATTCGAAATTATAAAGTCTTAACCTTTGGCAAAGGTTTTAAACATTTGGCGCACAAACAGAGGAGATGCTTGGAAAAAGCAAACCTGTTTTCGATTGCCATCGAAACTGATTTTCAAGGAGCTGTCGTAGtcttgtaatatataattttttcaaggGTGTTTAAACGCAATAGGCTTTTCTATTTTCGTTTACCGTTTTTATATAGGCCATTCTACAGAACTGGTCCGAAGTCATTGGAAAcatcttggaaaaaaaatagtattttctaaattatttgtatgtatgcaaGTCGAGCGATTTCCAAGGTACAAATTTGTAGTAATTGTGCAGTAAGTTCTCATATTGTATTTTCAGAAAGTTTTGGAATACGTCATTATGTGAAACgcagtaataatttaattatttaataaaaaaacaattacattttaaacaatatttcaaGTATAATTTGTGAGATTTCAATTGcagatttttcatattttgaacgCTTTTACCTCAAAACGATGAGACCGCATATTGTAGCTATGAGAGATATATGATCGTAAATatatgggtgtttttttttcagataaaactTCCCAGTGTTATGGAAATTgcaatgatatttattttaataactatcACTATCAGAGGTGGACTTAACCTTAGCTAGGTGACCATCTTGGGCCCGCACAAAATGTCCGCACAAcacttttcagaaataaaagatGTGCATTAACCATGGAGACGGTTGCTGTGTTGCCAGGACAACCACTGGCATGGCTGCAGTAAATGTACTTCTTTTGTCTTCAGCTTGtagcaaatgaaaacaatggatctaaagtgtaattaaacattaagcAACATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250682.1 lncRNA upstream 10776 18903235 ~ 18907824 (+) True LOC122343164
TU43902 lncRNA upstream 103322 18814883 ~ 18815278 (+) True G29633
TU43888 lncRNA upstream 133354 18785045 ~ 18785246 (+) True G29627
TU43851 lncRNA upstream 253517 18662860 ~ 18665083 (+) True G29600
TU43831 lncRNA upstream 315284 18600428 ~ 18603316 (+) True G29591
TU44148 lncRNA downstream 9809 18932319 ~ 18932690 (+) True G29777
TU44169 lncRNA downstream 44877 18967387 ~ 18967714 (+) True G29797
TU44175 lncRNA downstream 123200 19045710 ~ 19053414 (+) True G29803
TU44189 lncRNA downstream 157258 19079768 ~ 19080189 (+) True G29809
XR_006250695.1 lncRNA downstream 447261 19369771 ~ 19371889 (+) True LOC122343175
XM_043237213.1 mRNA upstream 3578 18908916 ~ 18915022 (+) True LOC122342974
XM_043237394.1 mRNA upstream 20810 18894901 ~ 18897790 (+) True LOC122343078
XM_043237361.1 mRNA upstream 48817 18865853 ~ 18869783 (+) True LOC122343055
XM_043237200.1 mRNA upstream 86007 18823925 ~ 18832593 (+) True LOC122342961
XM_043237281.1 mRNA upstream 104006 18810860 ~ 18814594 (+) True LOC122343011
XM_043237417.1 mRNA downstream 11197 18933707 ~ 18937665 (+) True LOC122343092
XM_043237335.1 mRNA downstream 28217 18950727 ~ 18953599 (+) False LOC122343037
XM_043237337.1 mRNA downstream 28414 18950924 ~ 18953599 (+) True LOC122343037
XM_043237336.1 mRNA downstream 28414 18950924 ~ 18953599 (+) False LOC122343037
XM_043236046.1 mRNA downstream 38152 18960662 ~ 18962974 (+) True LOC122342236
TU43926 other upstream 32198 18883179 ~ 18886402 (+) True G29642
TU43756 other upstream 457283 18436460 ~ 18461317 (+) True G29545
TU43729 other upstream 617411 18300415 ~ 18301189 (+) True G29526
TU42966 other upstream 2444219 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 2932874 15985219 ~ 15985726 (+) True G28899
TU44195 other downstream 367710 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 808752 19731262 ~ 19786128 (+) False G29835
TU44230 other downstream 823231 19745741 ~ 19747442 (+) False LOC122343071
TU44267 other downstream 1115428 20037938 ~ 20040195 (+) False LOC122343063
unassigned_transcript_309 other downstream 1140144 20062654 ~ 20062727 (+) True trnam-cau_2

Expression Profile