RNA id: XM_043237359.1


Basic Information

Item Value
RNA id XM_043237359.1
length 3026
RNA type mRNA
GC content 0.39
exon number 3
gene id LOC122343053
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24427508 ~ 24433826 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaccagactcagttggggccagttctcctctgaccagacgaccagcacttaacttgtcagatagtgtaaatgactaaGTGAACGCAGcaggacgggcaggactataatgtgatatcAGTATGGAGTGTCCCCTAATTCTACGACCCCTGCCTAAAAGTGTGTGTAATAATGGTCACTTACATACAGTAACTAATAAGACACATTACTATACTTAATTTGTAGTGGAAGTACACACACTGTAAACTAAAGTGCTACCAGTTTATCAGATATTCCACATAATACTATTGCTTTCATTCACTGGTCCGTTACTTTAAATACAAGTCACGACTGACCAGTATTGAGTAGTACTGAAACACTcaatcaaaaatcatttaactgCTTTATTGATGTATGCTGACTACAAAACTGTTAAAGAAAAGCAGCTTGTGAGAGTCAAGAACAAGAGCTAAAAAGAGAGAGTTAGTGTTTCTGCTTCTTGTACGTACTGAACACTCTTCAGATAAGGAGGAGGAACTGCTGAGTGTGCTGTCATTTCAGTTATTGCCCTTCTGTTGACCATTggaattaaatgtatatatagtctgtcatttaattcaattaaacaaTAGATCTATCTTCAACCACAAACTTAATATTCAAcctaaatcattaaattaattgttttccGTTTTAATGTAATATGAAGATCAAGATCAGGGTTTCTTCGTGATTGAGAACATCACAAAGGTTCTGTAGTTGCAGTATTAAGATAAAGCATATcttataaatgttttctctgtGTGAGTTTCTGTTTCGGGTGagcgggacttttattttggcgcgGCGACATGACGTCATAAGGCGGCGACGCGTTCTTGCGTCTGTTTCAGCTGCAGAAAGATAGAGACCTGCTGAAGAGACCGAGGTCCATGCGTCACTGTCAGAAAGATGGcctttattaaagaggagagagaagatgTGAAgattgaaaaagcattttctgtcAAGTGTGAAGATACCGAGGAACACACAGAGAAGACGTTTatcaaacatgagagtgaagacgTGAAGATTGAAGAAGCTAAACATGAAGATATTAAAgaacaaacagACCTGATGACGCTGAAAGAGGAGAATCAAGAATTGAATgcaattcaaaagaaaaatcattatgaCAAATGTCAGGATGTCATGTCTGGggaaaaatctttttcttattCTCCGACTCAAAAAATAGAAACTAGATATGTTGAATTCCAGATGAGAGTTCACACTGATGAGAAGCCTTACACCTGCAAgctgtgtggaaagagtttcccAAAAAAACTAAGTGTTAATGTTCACATGAGAAATGTTCACAATGCAAAGAAGCCATTCAAatgctctcagtgtggaaaaagttttAAACAGAAACGGCATCTTAATTCCCATGTGTCAactcacactggagagaagccttataCCTGCAAACTGTGTGGGAAGAGCTacacaagaaaagaaaatcttaaatatCATATGAGTGCTCACACTGGAGAGAGACCTTACACTTGTGAACTGTGTGGGAAGAGCtacaaaagaaaggaaaatctTACATTTCACACAGGAATTCACAGCGGAGAGAAAACGTTCatctgctctcagtgtggaaagagttttaaacAGAAGAAGTACCTCAATGATCACATGACAATtcacacgggagagaagccGTTTGTTTGTGATCTGTGTGAAAAGAGTTTCAGGTGTAAAGGACACCTTGATCTTCACATGAAGAGTCACTCGGGAGAGAACTGTTTTATATGTCagcagtgtgggaagagtttctcACACAAAGGAAACTTTGAGAATCACATGAGAACTCACTCCGGAGAGAAACCCTTCACCTgtcctcagtgtggaaagagcttcacGGCTAAAGGAAATCTTAAGAttcacatgagaattcacactggagagaagccttacaagTGTCCTCAGTGTGACACCAGCTTCACGTATCACACAGACCTGAAACGACACTGGAAAACTCATTCCTGTCACACTGAGCAAATTGGCAATTTTAACAGTTATCTGCACATTCCCTCAGAAGAAAGACAATTCAGTTCTGAGTCCaattaaaacattgcattaGCACATTCATTAGGGTCACCATAAGTCATTTTTCCCTGGCGCAGACACATCCTAGCCAGGAGTCCTATATagcctaaaatatctaggttttggctttgtaaTTCACAGATCGGTGTATGACATTGGttccttatgttttcaaaatgtactttGAATCAGAATACAGATGCTGGCAAGGACGTGTCTGGGAAAAATGGCACACATAGTCGCCCTATGAATGCACCCGATTGTACTCTTTAAGTCTTATTCCGACAGGACTAGTTTTACGTGAAGAGGTGCAATGAAGTATTAccagtaatatataattttgtacaaTGTCAGTTAAGATCACGGTGACCTTGGGTAATGCTAATCCCACACTAATATATTAGCTGTAAATATGTACAGTCAGTATGATTTCACCTATAGGGTGAATAAGTGTGATCAATAGGGAAAAACATGTCTTGTGTAACAGCCCTAGGGCCCACTTGGTAGCGTGAGACTTTGACATGGATGCTTACCTGTCTGTCTGCAGTGAACTGTTCATGAAAAGAATATGTTACAGGATGGCATGATGAGGGCGACTCTCAAGGCAGCCTCCTGGTTGGTTGAGAAGTGAGGGATTTTATTGACTTCATATCTCAAGAAATGTATTTCAAGTACCTTTGATAAGCTGCTGTGAGCTTTGTGTGATGTCTTTGCTCATAGACTTcttgtgtgtgtaaattgtCCTTTATCTCTACagagaattaaattaaaaaagacaaactttTAACTTGTGTGTTACTCTTCACAATTGTTTTGACTATTTGACTAAAAAACCTACAACGGTACACAAATATTCCatcatttaagatttaaaagtaGCTTTCTGTGGTTCATGATGACTGACAGGACTGAATGATCAGTCTCCTCCCGAACCTTTTGGATCTTCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250692.1 lncRNA upstream 7940 24417843 ~ 24419568 (+) True LOC122343172
TU45595 lncRNA upstream 113220 24310339 ~ 24314288 (+) True G30819
TU45594 lncRNA upstream 113220 24313194 ~ 24314288 (+) False G30819
TU45514 lncRNA upstream 417617 24003642 ~ 24009891 (+) True G30754
TU45513 lncRNA upstream 417724 24003642 ~ 24009784 (+) False G30754
TU45587 lncRNA downstream 22196 24456022 ~ 24486887 (+) True G30812
XR_006250675.1 lncRNA downstream 202526 24636352 ~ 24638266 (+) False LOC122343159
TU45650 lncRNA downstream 202538 24636364 ~ 24638654 (+) True LOC122343159
TU45666 lncRNA downstream 239141 24672967 ~ 24673594 (+) False LOC122343086
TU45676 lncRNA downstream 280871 24714697 ~ 24714998 (+) True G30877
XM_043236129.1 mRNA upstream 12282 24414458 ~ 24415226 (+) True LOC122342343
XM_043236127.1 mRNA upstream 105370 24319640 ~ 24322138 (+) True LOC122342339
XM_043237469.1 mRNA upstream 114761 24309427 ~ 24312747 (+) True LOC122343118
XM_043236124.1 mRNA upstream 167992 24252667 ~ 24259516 (+) True LOC122342333
XM_043237411.1 mRNA upstream 174980 24248388 ~ 24252528 (+) False LOC122343090
XM_043237342.1 mRNA downstream 15195 24449021 ~ 24453208 (+) True ttll1
XM_043237307.1 mRNA downstream 20444 24454270 ~ 24464904 (+) False LOC122343028
XM_043237308.1 mRNA downstream 20499 24454325 ~ 24464905 (+) False LOC122343028
XM_043237306.1 mRNA downstream 20499 24454325 ~ 24464904 (+) True LOC122343028
XM_043237296.1 mRNA downstream 31628 24465454 ~ 24471450 (+) True LOC122343023
XR_006250666.1 other upstream 286097 24133050 ~ 24141411 (+) False LOC122342990
XR_006250665.1 other upstream 304688 24117289 ~ 24122820 (+) False LOC122342976
TU45341 other upstream 1260251 23163769 ~ 23167257 (+) False LOC122342321
TU45342 other upstream 1260251 23163769 ~ 23167257 (+) False LOC122342321
TU45351 other upstream 1267752 23157559 ~ 23159756 (+) True G30632
XR_006250669.1 other downstream 20499 24454325 ~ 24466400 (+) False LOC122343028
XR_006250668.1 other downstream 31628 24465454 ~ 24470867 (+) False LOC122343023
TU45649 other downstream 202538 24636364 ~ 24638654 (+) False LOC122343159
TU45653 other downstream 206303 24640129 ~ 24646571 (+) True LOC122343125
TU45681 other downstream 287598 24721424 ~ 24728447 (+) True G30882

Expression Profile