RNA id: XM_043237360.1


Basic Information

Item Value
RNA id XM_043237360.1
length 3393
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC122343054
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18655244 ~ 18661653 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCCGCGACGCGCTCCCGCATCTGTTTTGATTCTGCCGAAGAGAGGTTTGTTTATAagcatttaaagtgtttaaatcagCGCAAACCTTGCGCATTTTTTTTCATGCGATGCGTTATTATAAAACTCAAAATTGCGATGCGTTGTTTAAATTTAACGCACGTTATTTTGCGTGCATGAAGCTCCACTCACGAGTAACACAAAAAGTGCGCTTTCGCTTTATCACAAACACGAATTAATTCACTGTGAAGCAGTCTTGAGAGAAACTGAGCTTAAACTCGAAGACGGTCGAATCGGTTGCTCAAAACGAGAACGAAAAACACGATCCAAATAAACAATCGGTTAAATGCGACCTTTGGGTCGTTAAATGcaaaactaacattaaaaatggCTCAGCAGGAACCTCCAAGAACTAAAATCACTGCGTACCATTGAACTGACCGATTCAGGGAGCTtgcattgatttgtttttatgttaattatttgacagaGCCTCAAAAACTCCCAACCGAGATCCACAATGGCTTTTATTAAAGAAGAATGCGTAGACATTAAGATTGAAGACGCATTTGAGGTGAAGCAAGAAGATACAGAGCAACAAATAGGTCCGACGTCCCTGAAAGAGGAGTATAATTTACCGAGCGAAACGGAGGAGAAGCATCAGCTGAAGAAGCAGCATGACTCCGCACCTGGAGAAACTGCGGCGCAGCCTAAAAAGAGAGGCCCGAAGCTGAAGCCTCTGCCGCCGATAATCTGCTCTTATTGCGGCAAGCGTTTCAACCAGCACGGAAACCTCACGGCCCACCTGCGaatccacaccggagaaaagCCTTTCACCTGCCAGGAGTGCGGCAAGTGCTTCACGCAAAAAGCGCACGTCAAAGTCCACATGAAGGTCCACACCGAAGAGAGCTCCTTCACCTGCCAGCAGTGCGGAAAGTACTTCAACCGGAAGACCAACTTCATGTTCCACATGAGGGCCCACGCCGAAGAGAGGCCTTCCGTGTGCCCGCTGTGTGGGAAGAAATTTAGCAAGAAAGGAAACCTCAAGGAGCACATGCGCATTCACTCCGGGGAGAAGCCGTACGCGTGCGCCCAGTGCGGAAAGGGCTTCGGGCGGAAAGGAAACCTCCGGGAtcacatgaggatccacaccggagtcAAGCCGTACGCCTGCCAGCACTGCGAGAAGAGCTTCAGCCAGCTGAGCAACTTGAAAATCCACATGAAGGTCCACAGCGGAGAGGGCTCCTTCGCCGGCGGTTTCAGCTGCCGacagtgcgggaagagtttcgATCAGCAGGGCAACCTCAAGAACCACATGAtaatccacaccggagagaagccgttcgTGTGCGaccagtgcgggaagagcttcaacCTCAAAGGAAATCTGAAGGTTCACAGCAGGGTTCACAGCAGGGACAGCCCTTTCACCTGCCAGCAGTGCGGGAAGACGTTTACCCGGAAAGGCAGCCTCAAGGTCCACGCCAGGGTCCACACCGGAGAGCACCCTTTCGTGTGCGTccagtgcggaaagagtttcCCGCACAAGAAAAACCTGAAGTCGCACGTGacgatccacaccggagagaagccgttcgCGTGCcgtcagtgcgggaagagcttcagtcaaaaacaaaGCCTCGCAGtccacatgagaattcacaccggagaaaaACCGTTCGCCTGCCGACAGTGCGGACTGAGTTTTAGGCGTAAAGAAAACCTCAATGCCCACCTAAGAGtgcacaccggagagaagccttataAATGCCAGCGCTGCGGTCAGTGTTTCGCGCATAAAGGAAACCGCAACGCCCACATGcgaattcacaccggagagaaacccttTACCTGCGCGCAGTGTGGGAAGAGCTACTCGCGAAAAGAGTGTCTCAAGACTCACATGCGGATTCACGTCGGAGAGAAGCCGTTCGTGTGCggtcagtgcgggaagagcttcaggTGCAAAGTAAACCTTAATCAGCACATGAGGATCCACTCGAGAGAGAACCGTTACGCGTGCCACGAGTGCGGGAGGAGTTTCTCGGACGGGAATGACCTCAAGAATCACGTAATGACTCACATCGGAGAGAAGCCCTTCATGTGCCGTCACTGCGGAAAGGCTTGCGTGAGCCGATCGATCCTTGAGATTCACGTCAGAACtcacacgggagagaagccTTTCGCGTGTAGGCAGTGCGGAAAAGGGTTTACGCATAAGGGAAACCTCAAGATCCACACgagaattcacaccggagagaagccctacGCGTGTCCCGTGTGTGAAAAGAGTTTCACGTATCTAAGGGACCTAAAATGTCATTCGCAGACGCATTCTGGAAAGAAACCGTAGCGTTTTCGGGTCTGAGAGATGATAAATGCGCTCGGGAGGAAGACCATTCGCTGCTTGCGTTCCTGAGAAAAGACTTGAGCTTTCGATTCTGTGAAAGATTCTTCTTGTTCTCATCAGAAGGACACACTTGCTCCAGATACCTCCTAAAGCAGTGGTCTCCACGGCTCTGCACGGGTTAGCTCCACATAACACCTTcttggaagtttctagtgatccCAAAGACCTCGATTAACTGGATTGGACGCGTTTGGGGATAGAGCAAAAGgtcctccaggaattgagtttgagactaCTTCAGGTACAGATCTCTTCACAGCAGCGAAGTAACTTTTTGTAAGAGAACATTTCTGCAGGTCTAAACAGGAACACCCTTCTAACACTGTCCTCATAAGACACTGCGTCCTCATACGaggacatttatattttagtgaatatTGCTGAGACcatgcacaaaaatgtttgGAGTCTGGATGTCCTGTGAGGAGCACGTTCAGAGCTTTTCAGAGACACCTAACGATTGAATGTTTCACCATGACCACTCCCTCTCTGCTTGgtcttcaaaaatgtctgaaattaatttagtgaaaCTCTTATGGAAAtgtgataatattttgtaattctcattcaaatacaatttttaaattgcGTGTCCTAAATCATCTCAGCAAAATGTTATGGggtttaaaatcaaaatatgaccTTCCGTTACTAAACAGGACATTGATTTCATACATGCTTTTAGTTCCAGTGtccttttatgtttattatgcattagaGAGGCATAACAAATGAATAggggaaagaaattatatttcagtattctgTCTTAAAGATATCTTGCCATATGcaatatgcaaattagattgTTTACAGATTACATTGTACATAATGAGAAAACCTGTTTATgaccattttacacacattttcctGAAAAAAGGTATATCGAATAATTCTGTTGTAACATAGTTGAGAATCATCTTTATACAAAgtttgtaaactaaaaataaattcaaatgcattggtgatttttaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43989 lncRNA downstream 90799 18563154 ~ 18564445 (-) True G29682
TU43983 lncRNA downstream 95963 18556624 ~ 18559281 (-) True G29680
TU43984 lncRNA downstream 96976 18556500 ~ 18558268 (-) False G29680
TU44075 lncRNA upstream 50098 18711748 ~ 18712103 (-) True G29720
XR_006250719.1 lncRNA upstream 76165 18737815 ~ 18740781 (-) True LOC122343197
TU44083 lncRNA upstream 82951 18744601 ~ 18747308 (-) True G29726
TU44096 lncRNA upstream 121955 18783605 ~ 18783915 (-) True G29736
TU44098 lncRNA upstream 124546 18786196 ~ 18786692 (-) True G29738
XM_043237172.1 mRNA downstream 50934 18594319 ~ 18604310 (-) True LOC122342949
XM_043237173.1 mRNA downstream 50934 18594329 ~ 18604310 (-) False LOC122342949
XM_043237347.1 mRNA downstream 63857 18587664 ~ 18591387 (-) False LOC122343043
XM_043237348.1 mRNA downstream 64048 18587663 ~ 18591196 (-) True LOC122343043
XM_043237345.1 mRNA downstream 71802 18579651 ~ 18583442 (-) False LOC122343042
XM_043237422.1 mRNA upstream 1208 18662858 ~ 18668809 (-) True scgn
XM_043237165.1 mRNA upstream 31352 18693002 ~ 18735598 (-) False LOC122342944
XM_043237162.1 mRNA upstream 31352 18693002 ~ 18735597 (-) False LOC122342944
XM_043237164.1 mRNA upstream 31352 18693002 ~ 18735597 (-) False LOC122342944
XM_043237167.1 mRNA upstream 31352 18693002 ~ 18735597 (-) False LOC122342944
TU43941 other downstream 226901 18408560 ~ 18428343 (-) True G29653
TU43653 other downstream 675322 17970605 ~ 17979922 (-) True G29473
TU43577 other downstream 918970 17735350 ~ 17736274 (-) True G29417
TU43541 other downstream 1016535 17637159 ~ 17638709 (-) False srd5a3
TU43209 other downstream 1533115 17118628 ~ 17122129 (-) True xrcc3
TU44045 other upstream 63175 18724825 ~ 18735640 (-) False LOC122342944
TU44133 other upstream 238915 18900565 ~ 18902548 (-) False LOC122343082
XR_006250672.1 other upstream 254676 18916326 ~ 18917533 (-) True LOC122343130
TU44159 other upstream 269886 18931536 ~ 18931875 (-) True G29787
unassigned_transcript_306 other upstream 1398939 20060589 ~ 20060671 (-) True trnal-aag

Expression Profile