RNA id: XM_043237365.1


Basic Information

Item Value
RNA id XM_043237365.1
length 3913
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC122343058
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 19981179 ~ 19990088 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAGTTTGTAAATCAACGCCAAGTCTTTTGTCAGCGGGAGGGTTTTCAGAAGTTGCTGTAATACTTGagttaaattcaaatataacgTTATTTTCGCGAGTAAAGCGCGTCCTCGTATTAATAACAGAAAAGGACAAAGTTTCCAAACACCTAGAAAAACTGCCGAAGCGACCGACGTCCATGTGACGCAATAATAAAGATGCCGTTTATTAAAAAGGAGAGTGAAGACGTGAAGGTCGAAGAAACGTCCAACCGTGAAGATACAGAGGAGCGCGCGAAGACGGCGTTCTTCAAAGAGGAATGCGAAAACGTGAAGATAGAAGATGCATTCAGAGTCAAACAAGAAGATGAGGAGCAAATAGACCTAATGGCACCTAAAGAGGAGAGGGACGTGTTGAATGAAATTGAGGAGAACGATCAGAACGGGAATCTTCATGATTTCATCAGTGGAGAAAAATCACTTCGTTCCTTACAGTCCGAAAAGACTGCCACGCGAAAAAGAGCCCAAAAGAAAGGTGCTGGGAATTATTTCACTTGCTTTCAGTGTGGAAAGGCTTTCAATCAGCAAGGAAAGCTTAACAGGCACATGAAAATTCACAACAGCTCTCCTCAGTCTGGAACGAGTTCCAATCGAAATGGAAACCTTGACGTCCAAAGCCCTTTTACCTGTAAACAGTGTGGAAACACTTTCACGTACAAAGGAAGCCTTACCAAgcacatgagagttcacactggagaaAAGCCTTACACCTGCAAACAGTGTGGAAAGGGGTTCAGTTTTCACGGAAACCTGAAAGtccacatgagagttcacaccggagagaagcccttcaTCTGCCAGtggtgtggaaagagtttcagtcaGCACGTGAATCTGGAATCTCACATGagaatccacaccggagagaagcctttcgGCTGCAAacagtgcggaaagagtttcagtCAAAATGGAAACCTCATTCACCATCTGagaatccacaccggagagagaccTTTCACCTGCAAACAGTGCGGAAAAGGTTTCAGTCAACTCGGAACCCTCAATTACCATAAGAGAGTCCACTCTAGAAAGAAACCCCTCGCCTGTCTCAATGCCCACAGGCGAGTACACGCTACGGAGAAACTTTTTACCTGCCAACTGTGTGGAAACAATTTTACTCATAAAGGAAGTCTCAACAGGCACATGAAAATCCACATTAAGGAGAAGCCTTGCGCGTGCTCTcggtgtggaaagagtttcggTCAAAAACGATACCTTGACGttcacatgagaattcacactaAAGAGAAGTTTCTGCTGAAAAGGTAACCTTGGGCACCTCATGGAGATGTTACGTGTTTTACATACAAGAACATCCAAGGAGTCTTCCCGGGAAAGCCTGTCATGTACCATCACTGTAGAGTAACACTCTCGCAAATTGTCACATAATGGGGATAGAAAAGGACTCTTTTCTAATTTACAgacaaacatttctaaaaaggAACGCTCGTATCTTGAGGTCGGTGTTGTTCTTGTATGTTGTATACTGTCAGACACGCGTTACGATAGAACCACTAGTTAACGTAACCTCACCTGTATCGTGTTTGGTGTCTATGAATTCTGTCAATGATCtaaatgcaagaaaataaactttctttaaagttttatgaGACCTCTTCATCGTCACACACGGTGCTCCAGATTTTTCTCCTTGGTAAGAGACTCTGGACATCTCATATTTGTCTcctttaggaaaaaaaataaacaacatcacACACCGTGCTTCGATTACTTACCTTAGCTACAGACGCCGGACCTCTCAAGATGAAAATGCTCTCATTAATTACtgaccctcatgtcatttcaaactcgCATAGACTCGTCGCtcctcagaacacaaattaagatattttatgcCATGTGAAATGTTGAGGGAAAAGCGGGTTTCACTTTCAATTCACGGCTGATGAAATTATGGTGGCTATCTGATACTACTGGTTAAAGacacacccacacatacacacctgaGTTCTGAGAAAGAGAAACTTAAGTGTAGCTGTGCGGGAAACAGAAGTCATCATGGAAAGAGAAACTCTCTCTGGATGATTTATAAACACGTACCCACAATACTGCATCAGCAGCAATACAGAGGACCGAGAAAAAGTTCTATTCAGCAACATGGATCCCAGAACCAGAAACAACTTCCTGCAGTATTCCAGTCCTCTCACCCTGGACCTGAACACAGTGAACAAACACCTCTGTCTGTCTGACAGGAACCGAGAGATTTTTGGTACTCTCACAGAGCAGCCGTAtactgatcatccagacagatttgatggaTATAATCTTCAGGTGTTGTGTCGAGAGAGTGTGTGCGGACGCAGTTACTGGGAGATTGAGTGGAGCGGGATGTTTGGTGTGGACATATCGGTGTCGTATAAGAGCATCGGCAGGAAGACAGGTGGCGACGAGTGCCTGTTTGGAcgtaatgatcagtcctggagtttgttaTGCTCTCCTGACAGATGCTCATTTGTTCATAATAACAAACGGACTGAACTGCCTGTAGCGTCCAGCCGTAAAGTAGGAGTGTACgtggatgagagcgcaggaactctgtccttctacagcatCTCGGACacaatgagactcatccacacagtccagacaaCATTCACTCAGAGCCTCTATCCTGggttttatgcatttgttggatcatcagtgaaactgtcTTGATGAATCGTTTTAGCCATTTCTATGTAATTTCTTTGCACATGCTCTCTTTTGCACCGGAAGCTCCTGACAGCTCAACGTATCACAATGAAGATTTAAATCGGGATCACAGAACACTTTCATGCGGTAATGCCTCAACCTCCTCGCACTTAACCGAATCACTGAAGGACACCTGGTCCCATGCCTGAACCAACAAATCAGACCGTTCAGCTAATCCTTCCTTATCATAGTCTTGCTTGGTAAAAAGAATAACAAcaatcattaatttaaataaaataaaagtccaaCATAAAACGTAATAAGCATAAACGTAATTCATCTCTGAAGTCTTTAAGTGAGTGGTAGCGCTAAAAGTTACATGTTAATGAACTCGAACAACTTTTGCTATTTAACtgttcagagtgtgtgtgtgtgtgggtggatcctgaaaatgaataattaaaaacccAATAACTACCAGTAGGTGGTAGCCTAAGACCACAAAGCTTTAGCAGGCTATTCGTGTTGATGGTTTGTATTTGGTCGGTGATACGTTAGATCTTGATGGTTGAGATCAGTAGGTGGTAGGCTAGATGTTTGAGGGGTTGATGTGGGTGGAGGGATGGATGTAGATGGTGTGGTTCGCAAAAATTCTTAAACGAAAGAATGTATGGCATGAAACTGACGCTTATTGGTTTACACCTTTTTCATCACAGATTGCAATATGCTTTGTTTCTGGTGAGGTGTGTTTGAATGAGCAATGTGTAGCTTCACGGAGTGGCAAGGACAGTACacgataaaaaaacaaataaatgtaaaaaatcttaaaaaatcttaaaaaaaaaaactaaatgcagcAGGGGCGCCAGAAAATGGcttgaaacaaaaaacaaacaaaaaaactaatttcttgTTCCATAATTACAGGTTATTACTGTaagtataattttaatatacataaaatcttttttacttttgacaaCAATTTTCAGAATACATTAATACACCTTTGAAATAAAACGATTGTCTTTTAtagaatgattaaaaaaaaagcttaggTACAGATAATTActgttgttattataaaaaaaacagtaaatctAAGTGTCGATACAAATTATGATATTGTTTGTATACattaactgtaaaattactTTACTGTAAACTTTATTCTAGGCTTCATTTTCACTGATAATAAACTCAACTCAACTTTGTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44247 lncRNA downstream 456 19980489 ~ 19980723 (-) True G29853
TU44245 lncRNA downstream 820 19979957 ~ 19980359 (-) True G29851
TU44240 lncRNA downstream 5038 19975231 ~ 19976141 (-) True G29847
TU44243 lncRNA downstream 7732 19944294 ~ 19973447 (-) True G29849
XR_006250722.1 lncRNA downstream 183922 19796736 ~ 19797257 (-) True LOC122343200
TU44310 lncRNA upstream 10981 20000988 ~ 20009712 (-) True LOC122343146
TU44325 lncRNA upstream 55107 20045114 ~ 20196427 (-) True G29896
TU44330 lncRNA upstream 152696 20142703 ~ 20144343 (-) False LOC122343174
XR_006250694.1 lncRNA upstream 152703 20142710 ~ 20144488 (-) True LOC122343174
TU44299 lncRNA upstream 155700 20145707 ~ 20146537 (-) True G29889
XM_043236060.1 mRNA downstream 227056 19752414 ~ 19754123 (-) True LOC122342256
XM_043236058.1 mRNA downstream 303859 19662898 ~ 19677320 (-) True LOC122342252
XM_043236056.1 mRNA downstream 506512 19471433 ~ 19474667 (-) True LOC122342247
XM_043236053.1 mRNA downstream 643687 19333729 ~ 19337492 (-) True LOC122342243
XM_043237435.1 mRNA downstream 963952 19015085 ~ 19017227 (-) True LOC122343103
XM_043237466.1 mRNA upstream 677 19990684 ~ 19994596 (-) True LOC122343115
XM_043237503.1 mRNA upstream 11086 20001093 ~ 20003553 (-) False LOC122343146
XM_043236063.1 mRNA upstream 155048 20145055 ~ 20145645 (-) True LOC122342264
XM_043237446.1 mRNA upstream 157928 20147935 ~ 20150658 (-) False LOC122343109
XM_043237445.1 mRNA upstream 157928 20147935 ~ 20150658 (-) True LOC122343109
TU44159 other downstream 1049304 18931536 ~ 18931875 (-) True G29787
XR_006250672.1 other downstream 1063646 18916326 ~ 18917533 (-) True LOC122343130
TU44133 other downstream 1078631 18900565 ~ 18902548 (-) False LOC122343082
TU44045 other downstream 1245539 18724825 ~ 18735640 (-) False LOC122342944
XR_006250670.1 other downstream 1319530 18656980 ~ 18661649 (-) False LOC122343054
unassigned_transcript_306 other upstream 70582 20060589 ~ 20060671 (-) True trnal-aag
unassigned_transcript_307 other upstream 71345 20061352 ~ 20061432 (-) True trnal-cag
unassigned_transcript_308 other upstream 72468 20062475 ~ 20062557 (-) True trnal-aag_1
unassigned_transcript_310 other upstream 73249 20063256 ~ 20063338 (-) True trnal-cag_1
unassigned_transcript_311 other upstream 74378 20064385 ~ 20064467 (-) True trnal-aag_2

Expression Profile