RNA id: XM_043237369.1


Basic Information

Item Value
RNA id XM_043237369.1
length 2170
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC122343061
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 22587723 ~ 22593908 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAAGACCAGGCATGAGAGCAGAGATATCAATTGCATAGTTTGAGGCGTCAAACAGAAACATCAGACTCAGGACAGAAACACATCCTATCAAAAATGGGCCAAACtctatattttcttcttcttctaattGAACGCTGGCCATCAAACGTGAATGTCTAGAAACCTAAAACTAACTTCACTACACTTTTTGAGCCAAAGCGCTAAATCCGACCCTCACTTTCTCAGCTCTCTGTTCTGTATCTGAATGTGTTCGGCGTCAGTATGACTTTATAAATGAGAAGAAGACCTGGAATGAGGCTCAGAGATACTGCAGAGAGAGATACACAGATCTGGCCACCGTTGACAACATGAATGACTTGAATGAGCTGATCAAGAGTGTGAGTGATATAAGTCTTCAGTATGTCTGGATTGGGCTGCAGAAGACCGGTCTTAATAAATGGCAGTGGTCTTCAGGAGAACCTGCGCTCTATTTGAACTGGGCTCCTGGAAAACCAAATGGTGTAGATGACTGTGGAATAATTGCAAATGGACAATGGAATAATACACCGTGTGGTTCTAACCAGCAGTTCATCTGCAACGGGAGTACAGGACTCGTCTTTGTCAATCAGGCAATGAATTGGAGAGACGCTCAGAGTTACTGCAGACAGAATCACATTGATCTGGTCAGTGTGAGGAACCAGAATGAGAATCAACAGATCATCAGTGATATAACGTTATCTGGTTCATGCATCTGGATTGGTCTGTTCAGAGACTCATGGCAGTGGTCAGATCTGAGTAACTCTTCATTCAGATATTGGAAACCTGGTCAACCTGATAATTCTGGAGGTAATGAAGGCTGTGTAGTGACTGAACCGAACGCTCAGGGACAATGGCATGACATCTCTTGCACCAATCAGTTTTCCTTTGTGTGTCATGAAGACGCTGAACTGATTCTGATCAGAGAGAATCTGACGTGGGCCGAAGCTCTGAGATACTGCAGACAGAATCACGTGGATCTGGTCTCAGTTCATTCAGAAGAGATGCAGCATCGTGTGAAGAACGTGGTTAAACGGGCGTCTACTGCAGTGGTGTGGATGGGTTTACACAACTACTGCGTCATGAACATGTGGCTCTGGCTGAGTGGAGAGATCGTGTGTTATCAGAACTGGGCTCCAGGGAACGGAACGACGCAAGAAAACTGCAAACTCGAGAAGAGAAAAGGAGCCGTTCAGTCTGGAGGAGATCAGCGCTGGATCAGCCTTCCTGAATCTTACAAACTCAACTTCGTCTGCAGCAGAAATTAAGAGCTTTGCTTACATTCACGGTTTTTATGAGttacttttacatttgatttaggAATTTCTGAGTTAATCTGCTTATTGGGTTTAAAAGTGGCCAGAagtctgtttatttctgtaCCGTAAAATTAGGGCTGGTAATTTAACacattaattagattaaataacTACAGTAAAATTGAACAcgttaaaatgtattcatgcatttaaaatacttgcCCTGCCCCAGACCTACGTGGGTCATCTGACATTTCATGCAGTTAACTGATGACGAATATGAGGCAGGGCATGGAGTCTAGAGAATGCAGCTCATTTGTGCTGTGGAGTTGTGCAAGGAAGAAATAGGTATATTTAGAAAAACCCAAAATGAGTCAACAGTTTGGAATCATTTAATGTGGTGTCTAAGAGATACAGGATTGTATATGGTTATATagagttttttaaatatttatttagttttactaaaTTTTTGAAGCTAATCACTTCACTCTCCTGTCCAGTTGGTGGCAGTAAACGCAGCATCCATAGATACATAAGATCAAGTGACCTCTGCCTTCTCTTAATTCACAAAATCAAACTTAAAAATTGCGAGAACAAAGCTTTGGAAAAGCCTtagttgtgttttaaatgtgctctgtgcataaataaatattgctgttGTTAATGAAGAGAGTTCATGTGGTCAAACTACAAATTCGAATAAACCAGATATGCTTTGCAAATTTACGTTTAACTTTTCAGAAGACAACATCTATCGTGACATCCAACTCAGTCACTTCTATTTATCAATCTTTGCGCTTCATCCATTCAATGTAACTATTTAGTAGTCGTTAGTTACTCTTGTCTATgccttttgttaataaaatccCTTTTTATTACACATGTGTGTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45232 lncRNA downstream 17665 22569635 ~ 22570058 (-) True G30547
TU45204 lncRNA downstream 86549 22500162 ~ 22501174 (-) True G30525
TU45195 lncRNA downstream 99554 22487420 ~ 22488169 (-) True G30520
TU45193 lncRNA downstream 100604 22486775 ~ 22487119 (-) True G30518
TU45181 lncRNA downstream 158966 22425592 ~ 22428757 (-) True G30506
TU45728 lncRNA upstream 176974 22770855 ~ 22772854 (-) True G30920
TU45737 lncRNA upstream 193665 22787546 ~ 22789302 (-) True G30926
TU45749 lncRNA upstream 264378 22858259 ~ 22861620 (-) False G30938
TU45751 lncRNA upstream 264378 22858259 ~ 22861620 (-) True G30938
TU45790 lncRNA upstream 457867 23051748 ~ 23053620 (-) True G30967
XM_043236107.1 mRNA downstream 2260 22578346 ~ 22585463 (-) True LOC122342314
XM_043236105.1 mRNA downstream 10229 22568224 ~ 22577494 (-) True LOC122342313
XM_043237366.1 mRNA downstream 88194 22495286 ~ 22499529 (-) True LOC122343060
XM_043237275.1 mRNA downstream 156100 22429074 ~ 22431623 (-) True LOC122343006
XM_043237171.1 mRNA downstream 192123 22385863 ~ 22395600 (-) True LOC122342948
XM_043236108.1 mRNA upstream 6665 22600546 ~ 22608778 (-) True LOC122342315
XM_043236109.1 mRNA upstream 43540 22637421 ~ 22643780 (-) True LOC122342316
XM_043237357.1 mRNA upstream 82577 22676458 ~ 22681205 (-) True LOC122343051
XM_043237408.1 mRNA upstream 96457 22690338 ~ 22692710 (-) True LOC122343088
XM_043237282.1 mRNA upstream 165540 22759421 ~ 22769574 (-) True LOC122343013
TU45110 other downstream 342563 22128454 ~ 22245160 (-) True G30450
TU45123 other downstream 371253 22216035 ~ 22216470 (-) True G30457
TU45011 other downstream 810917 21629617 ~ 21776806 (-) True G30396
TU44977 other downstream 847393 21737091 ~ 21740330 (-) True G30372
TU45006 other downstream 1201286 21383469 ~ 21386437 (-) True G30395
TU45768 other upstream 841099 23434980 ~ 23437015 (-) False LOC122342328
TU45855 other upstream 903248 23497129 ~ 23546369 (-) False G31017
TU45890 other upstream 1151605 23745486 ~ 23771768 (-) True G31050
TU45934 other upstream 1516343 24110224 ~ 24110673 (-) True G31091
TU46017 other upstream 1710215 24304096 ~ 24497596 (-) True G31134

Expression Profile