RNA id: XM_043237374.1


Basic Information

Item Value
RNA id XM_043237374.1
length 2312
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC122343064
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20263660 ~ 20266849 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAATACATCGACCTAACTCTCAGCATGAATGGCTTTCGTGCCCCCAGCGGTCGACAGGAGTTACTAAAAGTCAGAAAAGGGGACAGTCCGAAGAGGCTCGGGAAAACACACGCTACTGTACACAAACAATAATGCTCGTTTATGTATATCTACTGTCACATTTATCAGTGGTTAGGGCAGGTGCTCACTCACTGATGGCCTTCGCCACCTATATAATCGGACAGACACCGTTTCCAGAGTTCAGTGCCGTGGTGATGCTGGACGATCTTCAAGTGATGTATTACGACTCCATCACACGGAAAGCTGTCCATCGCTCCAATGAAGACTCACAAAACTACGACGAAGAGAAAAGTGATGCTGGTGTCATATTTCGTGATATGTACAACGACATGAAAGATCGAGCCTTTCATCTTAAGGAGCAGCTAAATCACACAGACGGTGTGCATGTTCACCAGAGACTTGCCGGGTGTGAATTACTGAATGATGATAAACCAGGTCCACTTCAGACGTGGGATGcttttgatcaaaaaaataaagaggagTTCATTTTCAACGAGGAGAAAAATCATTTCCAGATTGAACTGCCATGGATTACGTGGGACAATTTACAGTTTGCTCATATGaaatttttgtacaaaaatgtatatcatCCTGTTTGCATTAAAGTTTTGCAGAGTTACCTgcaaatgaaaaagaacaaCGTGATGAGAAAAGTTAAACCCAGAGTCAGGCTCATGAAGAAGACGCTCTCAGACTCTGGTGGTCTTCAGATCAGCTGTCTGGCCACTGGTTTTTACCCGCGTCACATTAACCTGACCCTGTTCAGAGACGGTCAGCCTGtggatgatgatcagatcacAGGAGGAGAGATTCTGCCCAACGGAGACGGGACTTACCAGATGAGGAAGACTTTGGTGATCGCTGAAGAAGAGCTACGTGAGGAACATAAATACAACTGTTCAATGAAGCGCCTCAGTCTGGACAACAAACTGGATATTACTTTTGTTTCAGATGTGGCTGAATCTGACCCAGGATCATCCACTCAGTCTGTAGTGTTCAGTGTGCTGGCGTTCATGTTTGTGGCTGTTCTCATCATAACTGCTCTCATCGTATGGAGGAAGAGACGAGCTGCTGGACAAGGCTCTGAAGTGTTAAAGTGTCAATACTCCTCTCCCTCATCTCCCATGCAAgatgaaacatgaaaatgtcGGTTATTTGCAAAACCTTAATTCACTTGGATGCCATTTAGATTTGACAAGGCCATTACATTTCAACAAGAGGAGAAGGTGTTCCTGGACACATTCACAGAGTATGAAAATATGGGCCAAATTGTTCAACATTTCATCTTTAACTAATCCTGATTTTTATGAGACTGATTGCAGCCCTGGAAGAGATGCAGACCATTTCCCAGAGACAGGGACAATGCTGGTCCAAATTACAAAGTATATTACTCACAGTATTTTGTCCTCTATAAAATTGATCACCTCATCTGAATGGAGGACTTTTATTGAAGTCTCTGGTGAGACATTTGCAAAAAGGACAAACTGTATTCTATCATGAAGAATATCTGTTGTACATTTCTATACATCAAGGTGTAGATGACTTGGAAAATAATTgtcttgaatgtttttttttatatgatttgcATGGTAATATGCATaacaatgttaatgtatttgtgtgttaaaGCATAGATCtgctgtgctgctgctgtgaGACTTGCTATTGCCAATACATTTGTTATCCATGTAAGAAATATTGCTGTATATCGCCAAGACATATGTACTGCTGCTGCTTTTTAAGAGCATGTGActgcatgtattcatttattatacatgtGCCTATGTTACTACGCCAACCAGTATAACAGTAGAGGCCACATGACTGTGTGAGCCTGTGCTATCTCTAATCAGAGGAACAAGGTTTATAATGTTCTCAagaaaaatacttattttatttaattcagtcattcattcattcatttatttatgttgggGGCAGTAGAAAAGACTTTAGTCCCTGCATAGCGGTTGCTACACCCTTCCGTCTGCCCTGgttgcatattatattatttatttgtttgttttatttttaatgcataaattgATGATAGGGTATCAAATGTTGATTCTTCAAAATACACCGCGAAGGGACAGTAATTAAACGAAGCTGTTTCCTCACCGAAACCTACCTAttgaaatctatttaaaataaatgttttcaaccTCTAAGCAGCTCTTGttatgaacagcacctctgtggctctctccgaccaccaccggagggagccctcacccgaGTACTGATCGCT

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0019882 antigen processing and presentation biological_process
GO:0005886 plasma membrane cellular_component
GO:0003823 antigen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44325 lncRNA downstream 67233 20045114 ~ 20196427 (-) True G29896
TU44331 lncRNA downstream 110215 20152894 ~ 20153445 (-) True G29900
TU44303 lncRNA downstream 116361 20146614 ~ 20147299 (-) False G29889
TU44299 lncRNA downstream 117123 20145707 ~ 20146537 (-) True G29889
XR_006250694.1 lncRNA downstream 119172 20142710 ~ 20144488 (-) True LOC122343174
TU44337 lncRNA upstream 4257 20271106 ~ 20272289 (-) True G29905
TU44345 lncRNA upstream 36264 20303113 ~ 20311182 (-) True LOC122343168
XR_006250688.1 lncRNA upstream 36358 20303207 ~ 20311190 (-) False LOC122343168
TU44344 lncRNA upstream 43070 20309919 ~ 20311182 (-) False LOC122343168
TU44789 lncRNA upstream 54725 20321574 ~ 20440841 (-) True G30238
XM_043236066.1 mRNA downstream 11775 20241615 ~ 20251885 (-) True LOC122342268
XM_043237465.1 mRNA downstream 97246 20164709 ~ 20166414 (-) True LOC122343114
XM_043237490.1 mRNA downstream 103387 20157155 ~ 20160273 (-) True LOC122343134
XM_043237446.1 mRNA downstream 113002 20147935 ~ 20150658 (-) False LOC122343109
XM_043237276.1 mRNA upstream 112 20266961 ~ 20269906 (-) True LOC122343007
XM_043237449.1 mRNA upstream 63598 20330447 ~ 20333281 (-) True LOC122343112
XM_043237178.1 mRNA upstream 301530 20568379 ~ 20578860 (-) False LOC122342952
XM_043237175.1 mRNA upstream 301532 20568381 ~ 21492901 (-) True LOC122342952
XM_043237176.1 mRNA upstream 301532 20568381 ~ 20580508 (-) False LOC122342952
TU44333 other downstream 25106 20237137 ~ 20238554 (-) True G29902
unassigned_transcript_385 other downstream 47421 20216160 ~ 20216239 (-) True trnal-aag_28
unassigned_transcript_384 other downstream 49328 20214249 ~ 20214332 (-) True trnal-aag_27
unassigned_transcript_383 other downstream 50338 20213241 ~ 20213322 (-) True trnal-cag_25
unassigned_transcript_382 other downstream 51117 20212462 ~ 20212543 (-) True trnal-aag_26
TU44338 other upstream 14257 20281106 ~ 20282400 (-) True G29906
TU44972 other upstream 1060867 21327716 ~ 21330093 (-) True LOC122343135
TU45006 other upstream 1116620 21383469 ~ 21386437 (-) True G30395
TU45009 other upstream 1116620 21383469 ~ 21385978 (-) False G30395
TU45011 other upstream 1362768 21629617 ~ 21776806 (-) True G30396

Expression Profile