RNA id: XM_043237379.1


Basic Information

Item Value
RNA id XM_043237379.1
length 2991
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC122343065
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24627064 ~ 24631306 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gttttCTGCCAGGTCAATTAAGGCCATCAGCTCTCAACTTGACTCTATGAAGCCTGACTAAATGATTCTCATCTGAACAGAACATCATCTGAGATCCACGCCACGCACTATAAAGATGACTCTTATTAAAGAGGAGACTGAAGATGTGAAGATTGAAGAAGCGCTCAAAGACGACGAGATTCAAGCTGGTTGGTTTTCCTTCTCGGAGCTGAATTGTACACCGTCTGTCCTTCTGCagctctctctccttcttctcAGCTTCCTGTAATGAAGGGCTGGTGCGACtttgtgcaataaaataataatattttattaccaaAAGTAATCAACAACTACTAAATGAACaccataaatgaaaaaagtgcaaaagaTTGTGATTATGTTGGATGTTTCTATGTCAGAGCTGTGTTATCTGGAGAGAGGAACGGTTTCTACTCTGAAAGAAATAAGGTGAAAAAACACGATGCATCTAACAAATAGCTGAAATCTGTAATCAAGTGCATTCAGCTATATAATATCTAATGTAAATTAGAAAATCATATAGTGATAATACAAGAACAATGCCAAGGTCTCTGGAAGAGATTTGGATAAGTGATAGTTACGTTCTCTGTCCGATGGCAGTGGAGAAAGGAGCAGGAATACGTTTAAACAGCTTTGAACACGAAACGCTGGAGGATGCTGATCTCCTGGAGCCCCGAAGGGTCCTTAAATCTGGAACACAAGATGTGGCCCTGGAGTAAGTGCAGAAGGTCTTTCCCTGGAACATGTAAGCTAAAGTACCTTGAAGTGAAGGTTTGCTTTCCGCAGCTTAACCTTGCTGCTGATGCCTGTGTTTCCTCTGCCTCTCTGGGCAACAGACTTGACTCTCCAGGATGGAGATTCATGGCGTGCTGCATCTGTTCCTGTTAAGCTGGACTTTCCTCGCAGACTGGAGGCTTTAAGCGTGGTTGTATCTGATGCTGGGACTCAGACTCAGACTTAGTTTCACACTAGACAGGCCGGAGATTCAGAACGTCCTATACCAGGAAGGAGAGGAACtggcagcagagacagacaaaagACTCTCAAGGGAAGACACAGGTTCACAAAAGGAAATCTTCCCATGGAACATATACATATAGGATCTCCATGGAGAATCAGCCATATGGAGCACCTAGACCAGTACAGGGGATGACCAGAACCTGGCAAGCTACGACGATACTGGGCCTGGCGTCAGGCTGCTCCGCCAAAGGAGGAGGAACCCCTCCATCCCCACCCACCCCCCATGTCTAGAACATGTTGTTGGCTTTGATGGTTCATACGTCTAAAGCCCGGCTCACTGTGTGATTTTGATTGTTTGGTCATCTGAGACAAATTTGAAAAAACCTAAAAGATTCCTAAaatcctagactaaaatgtatagttttgaTCGCTGGTTCAACGACATTGCCATGCAGTCAAATGTAACCAAATTAGTGCCTGAAGATTTGGCGCACAGACCCTCAGTATAACTTCTACAACGAACTTCAAACTGTATGCTTAAATATATCTATGTCTGTTTCTTTGTGCCATTAAAATGTGGTTAActtacattgttttcattttgctttaGACTTGATGTCATGCAAAGAGGAGAGTCAagaacagaatgaaatggaaGACAAATATAAACCTCATGTTTTCTCTGGAGACGCTGCTAATTTAAGTTGCTCACAGTCTAAAAAGACTTCTACACGAAAAAGAGCTCGGAAGACAAGAGCTATAGGTCATTTcccctgccaacagtgtggaaagatttttactgtaaagcGAAACCTCGAAGTTCATACTAGAATTCACACTGGAGAAAAGCCTTACAGCTGCCAACAATGTGGGAAATGTTATAGTAAAAATGAAACCCTCAAAGACCACATGAGAactcacaccggagagagaccTTACACATGCCCTCAGTGTGGAGTAAGTTTCAGTGAAAAGGGAACCCTTAAGAGGCACGTTAAAATTCACATCGGAGACAAGCCGTTCACCTGCCAGGAGTGTGGAAATAGTTTCCTTCGAAAAGGAAGTCTTAAAGACCACATGAGAATTCATACCGGAGAGCAGCCCTACATATGCCATcaatgtggaaagagtttcagacACAGACAAGCTCTTAACGTCCACCTAAAAATTCACTTAGGAGAGAAGCCTTACATATGTGAtgagtgcgggaagagcttctatcaacaaggacaccttaaagtCCACATGAAGAGTCACACCGGAGAGGGTCTTTTTGCCTGCCAAcaatgtggaaagagttttactaGAAAATCAAACCTGGAAATCCACATGAGAATCCACACCAGAGAAAAGCCCTTCATATGCACTCAGTGCGGAAAGAGGTTCGATCAACAAGGAACCCTTAAAGTCCACCTGAGAATTCACACAGGAGAGAAACGTTttacctgccaacagtgtgggaagagtttcactCAAAATGGAAACCTCAAAGCCCACATGAGGATTCACTTAAGAGAGAACAGTTTTATATGTCACGAGTGTGGAATGAGTTTAACGGACTGGAACCAGTATAACAATCACGTAACATCTCACGCTGGAGAGACGTGAGAATTCAGGCAAGAGAAGCCTTTCACGTGCTTCTCAGAGGAAAGAGTTTCAGGTCTAATGCCTCAAATGATTAATGTAAGTGTTCaccaataaataattaaccctcaagttgttccaaaccagtattttgagtttctttcttaAGGCTGGGGTACATTACACAATTTTTGGTTAATGGACTGAATGagtttatttttgaaatcatTCAACTACTGCGTTAACTTCTCCagactaaattaaaaatcagGGAAAAACACGCGAGGAACTGTCAGTATGGAGAcatacattttgtgtttcagggctgtgtttttgaccttaaaatgacattatttggtgtaatgcgTTTTATagattattttccacatactgtacatttattgttttttcgttttgtaaatacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46052 lncRNA downstream 74209 24513956 ~ 24552855 (-) True G31161
TU45967 lncRNA downstream 124889 24500852 ~ 24502175 (-) True G31115
TU46045 lncRNA downstream 160508 24465363 ~ 24466556 (-) True G31155
TU46046 lncRNA downstream 160508 24465363 ~ 24466556 (-) False G31155
TU45999 lncRNA downstream 168805 24457414 ~ 24458259 (-) True G31121
TU46084 lncRNA upstream 5545 24636261 ~ 24639737 (-) True G31179
TU46099 lncRNA upstream 36922 24667638 ~ 24669294 (-) True G31189
TU46102 lncRNA upstream 56812 24687528 ~ 24688132 (-) True G31192
TU46105 lncRNA upstream 67191 24697907 ~ 24710380 (-) True G31194
TU46110 lncRNA upstream 80068 24710784 ~ 24711425 (-) True G31199
XM_043237239.1 mRNA downstream 33111 24582967 ~ 24593953 (-) True LOC122342983
XM_043237262.1 mRNA downstream 63064 24558132 ~ 24564000 (-) True LOC122342998
XM_043236131.1 mRNA downstream 82894 24542138 ~ 24544170 (-) True LOC122342346
XM_043237444.1 mRNA downstream 134565 24485362 ~ 24492499 (-) True LOC122343108
XM_043236177.1 mRNA upstream 123340 24754056 ~ 24759307 (-) True LOC122342407
XM_043236132.1 mRNA upstream 333258 24963974 ~ 24981623 (-) True LOC122342349
XM_043236134.1 mRNA upstream 401418 25032134 ~ 25034674 (-) True LOC122342351
XM_043236135.1 mRNA upstream 856472 25487188 ~ 25496806 (-) True LOC122342354
XM_043236417.1 mRNA upstream 924068 25554784 ~ 25567493 (-) False irf10
TU46017 other downstream 129468 24304096 ~ 24497596 (-) True G31134
TU45989 other downstream 131886 24306501 ~ 24495178 (-) True G31120
TU46025 other downstream 299832 24323970 ~ 24327232 (-) False LOC122342340
TU46026 other downstream 299832 24325784 ~ 24327232 (-) False LOC122342340
TU46027 other downstream 299832 24326795 ~ 24327232 (-) False LOC122342340
TU46123 other upstream 128284 24759000 ~ 24760786 (-) False LOC122342407
XR_006250852.1 other upstream 721273 25351989 ~ 25352153 (-) True LOC122343864
XR_006250869.1 other upstream 721683 25352399 ~ 25352587 (-) True LOC122343882
XR_006250841.1 other upstream 723205 25353921 ~ 25354084 (-) True LOC122343852
XR_006250860.1 other upstream 723621 25354337 ~ 25354527 (-) True LOC122343873

Expression Profile