RNA id: XM_043237397.1


Basic Information

Item Value
RNA id XM_043237397.1
length 1587
RNA type mRNA
GC content 0.38
exon number 4
gene id LOC122343080
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21156073 ~ 21161025 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACATTTTCTAATGTAAAATGATCTCGATGAAATCGaacaagacttttattttggtctgGTGATGTGACGTCATAAGGCTGCGCCGCGCTCCTACATCTGTGATTTAACCGAAGAAATGTGCTggcttttaatcattttaagtgtttaaaactcGTTAGAGAATTACACGGAAGATACATTGTTAGCCAATGTAACACTGTGATGCGTTATTTAGTGACATTGCGGTCCCTGTTTAGTAAATAATTTAGCTTAAACGAATTCTTCCACTGGTAAGTGTTGATAGAAACTGAATCAATTGATTCACGAGACGATTCACTGATTTGAATCGATCGAATCGCCGCGCGTCGATGACTCTTGCTGCTCAAAACAACGAACACGTGATAATGAAAACTTTTACACACAAACTGcagctgtttttattaaagtgtgatctgttaaataatttacaaTCCaaaatcacagaaaaacacCCGGAGAAACAGCCGAGATCCACGTGGCACTAATATAAAGATGGCATttgttaaagaggagagtgaagacgTGAAGATTGAAGAAACATTCAGAGTCAAACATGAAGAtactgaggaacaaacagATCCATGTGACACTATTATAAAGATGGCATTTATTAAAGAGGAGGGTGAAGACATGAAGATTGAAGAAACATTTAGAGGCAAACATGAAGAtactgaggaacaaacagACCTGACAacactgaaagaagaaagccatctTCTCAATGAAGAAAACGACGACTCTCATtctgaaaagattaaaaaaagagatcaaaAGACAGCAAATAGAATATATTtgacctgccaacagtgtggaaagatcttcaaaaaaaaatctgacctCAAGGTCCACTtgagagttcacactggagagaagcctttcaccTGCCAACATTGTGGTAAGAGTTTCAACAGAAAAGGAAACATTGAAGTTCACCTAAGAGGtcacactggagaaaaaccttttacctgccaacagtgtggaaagggTTTTATTCGAAAAGCAGACCTTACATATCACACgagagttcacactggagagaaacccttcacctgccaacagtgtggaaagagttttactaAACAAGGAAACCTTAAAGAGCACATAAGAATTCAttctggagagaagccttacaccTGTAAGCTGTGTGGAAAGAACTTCATTCGAAAACCACACCTTACAAaccacatgagaattcacagtGAAGAGAAGCCTTACATGTGCCCTCaatgtggaaaaagttttacacaaaaacaacacctcATTGTCCACATaaggattcacaccggagagaaacctttcagctgccaacagtgtggaaagagtttcactgAAAAAGGAACCCTTAGAAAACATATAAAGATTCACACGCGAGAGAAGGCGTTTACAGGTGATCAGAGTTTCAGACGTGAAGTAGGTCTTTAACATGTTGTGATTTACTGTTCAGTGTGCTACTTGATCAACTGCCAAGTTAAaataaccctaacccctaacccggATATGCTCATATGTATTTGTCATTTGTgtgctttaataaaatcaaaggtCTAAAAATCCTTAAAGTGTTTAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250727.1 lncRNA upstream 22478 21131154 ~ 21133602 (+) True LOC122343205
XR_006250684.1 lncRNA upstream 29660 21126085 ~ 21126420 (+) True LOC122343166
TU44529 lncRNA upstream 37558 21117661 ~ 21118522 (+) True G30056
XR_006250691.1 lncRNA upstream 183831 20971510 ~ 20972249 (+) True LOC122343171
TU44494 lncRNA upstream 221168 20912558 ~ 20934912 (+) True G30025
XR_006250681.1 lncRNA downstream 2731 21163756 ~ 21167242 (+) True LOC122343163
TU44570 lncRNA downstream 87162 21248187 ~ 21248425 (+) True G30077
TU44588 lncRNA downstream 115085 21276110 ~ 21301007 (+) True G30090
TU44580 lncRNA downstream 150530 21311555 ~ 21337024 (+) True G30085
TU44614 lncRNA downstream 172220 21333245 ~ 21721910 (+) True G30104
XM_043237211.1 mRNA upstream 43752 21093453 ~ 21112328 (+) True LOC122342972
XM_043237194.1 mRNA upstream 89230 21055492 ~ 21066850 (+) False LOC122342958
XM_043237195.1 mRNA upstream 89230 21055493 ~ 21066850 (+) False LOC122342958
XM_043237193.1 mRNA upstream 89230 21055494 ~ 21066850 (+) True LOC122342958
XM_043237283.1 mRNA upstream 112062 21039781 ~ 21044018 (+) True LOC122343014
XM_043236082.1 mRNA downstream 6224 21167249 ~ 21167961 (+) True LOC122342285
XM_043236083.1 mRNA downstream 8168 21169193 ~ 21174340 (+) True LOC122342286
XM_043236084.1 mRNA downstream 16530 21177555 ~ 21182761 (+) True LOC122342287
XM_043237243.1 mRNA downstream 21212 21182237 ~ 21186135 (+) True LOC122342986
XM_043237205.1 mRNA downstream 61545 21222570 ~ 21230104 (+) True LOC122342966
TU44534 other upstream 13249 21118562 ~ 21142831 (+) True G30058
TU44410 other upstream 449234 20696672 ~ 20706846 (+) True G29961
TU44357 other upstream 787264 20367675 ~ 20368816 (+) True G29921
XR_006250910.1 other upstream 907851 20248111 ~ 20248229 (+) True LOC122343930
unassigned_transcript_379 other upstream 1048953 20107054 ~ 20107127 (+) True trnam-cau_25
TU44553 other downstream 8224 21169249 ~ 21170595 (+) False LOC122342286
TU44625 other downstream 207618 21368643 ~ 21761178 (+) False LOC122342301
TU44637 other downstream 227168 21388193 ~ 21630120 (+) True G30119
TU44630 other downstream 478515 21639540 ~ 21641756 (+) True G30115
TU44767 other downstream 1070445 22231470 ~ 22231924 (+) True G30218

Expression Profile