RNA id: XM_043237402.1


Basic Information

Item Value
RNA id XM_043237402.1
length 2350
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC122343083
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17713746 ~ 17717051 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTAAGTAAATTATTGCCGAAAGCAACAGTGTCATGCTTTATATATGTTGTCACAAATTAAAGGCATTTTGTTTGGATTACAGAAACGGTCTTATTTTGTAGCCCGCATTTTGAATCGGTTTATCAAAAACGGTGCTTTTCGAAACCGAGTCAACTGAATCAGTTGCTTCATAAAACGATTCGCTGTTTTGAATCACTCGAATCAGCGCGCGCTGACGACACGTGCTGCTCAAAACAAACATGTCATAAAACTTTCTCAGACCACGTGCCAATGTTTTTATGAGAGTGGAAcctattaaatGGAAAAAGTGTccaaacaaacaggaaaaaaactcAGTTGAGTTTGACGCGGTACGCTGTTATGAAGATggcgtttattaaagaggagagtgaagacCTGAAGATCGAAGAAACGTTCAGAGTCAAACATGAAGAAACCGAGGAACACATAAAGACGgtgtttattaaagaggagaaaGAAGACGTGAAGATCGAAGAAGAGTTCAGAGTCAAGCGTGAAGATCAAACAGACCCGACGACACTGAAAGAGGAGAGTCAAGAATGTGACTCCAAACCCGGAGAAGAAGCGTTTAGTTCCTCGCAGACTGAAACGACCACCTCGCAAAAACCAGCTCGGACAAACCCACCCACAGAGCTTGAATCCCGTGTGGGGGTCCCTTCCGGAAGGAGCTCCCTCACCTGCCGACGGCGCGGAGGAACGCTTCGGGAAAAAGCAAGCCTCAAAGTCCACGAAAAGAAGCCGATCGCGTGCGCTCAGTGCGGGAAGTGTTTCACgcagaaaaaaaacctcaacGCCCACATGcgaatccacaccggagagaggcCTTTCACCTGCGAGCTGTGCGGGAAGAGTTTTATGCGAAACGGGGGACTCAAGATTCACGCGAGAACTCACGGCGAAGACAAGCCGTTCAAGTGTTGCCGGTGCGACAAGAGCTTCGCGCTGAAAAAACTCCTCGACGCCCACACGAAGGTTCACACGGGACAGAGGCCTTTCGTCTGCCagcagtgcgggaagagcttcggCCTCAAGGGGAACCTTCAGACTCACACGAaaattcacaccggagagaatcTCTTCGAGTGCGTTCAGTGCGGGAAGGCTTTTGTGCAGAAAAAGCAACTTCGGTCCCACGTGAgcgttcacaccggagagaaaccgttcgCTTGCGACCGGTGCGGGGTGGGGTTCAGATATAAAGAAAGCCTCAATTATCACGCCAGGGTTCATTCGGGAGAGAAGGCCTTAGTGCGATTAGACAGCTAGCTTTTTCCTTTTAGCACGGATGTTCAAGACTCTACGCTGCGTTCAAATTCATGACTgactatttaaattatttgtaactTATGTATAACTTTTATACTTCACCAAAAAGTAGTTACTTTCAAATGTTGATTGGCTCTACTTTTGATTCCTCTAAAGCAAAATATCACCCAAACTTCTATCTTTGTGTCTGCCGACGATGGGTGCTCTTTAGCTTATCATTTAGTTAGAGGGGTCGTGTGGTGTTGCTGAAAAGAACGTTATTTTGTGCATAATGCAAAGTGTTTGtggtttaagtaaaaaaaactaacaaaacatgCTGTACATTGTTTCTCGTCTAAGCCCTGTCTTCTGAAACGGGTCGATTTCTACACAGCTAACTGTTCCAAAAAatgaggtgtgctctgattggacagatatccagtgtgttgtgattggccgaatacacacacacacacatatatagatagatatacacaatttaatattaacatcGCCACACTAGCACCCGTTGGTGTGTATCTACTCAAACGTACAACAAAAATTTGACTCCAATGTCTTCCACCCCTTCCACCATCTAGGATCCTGAGTAGTTGCTTTCAACAGGATTTGTTTCCTGTGCTTCTGCTTTAAATTCATCATCCAAGAAAGAGATTATTCAGACAGCACCTGAAAAACCAGACtggtttaactctaggggagatGGAAGATTAACCTGTGTTTGAAAATATTGGAGTGGTCCTTTCAGAAACGGTTAGATGCGTGGTGGTTTAACAGATTCATGCATTTCTTATATTAGCCTTAAAGGAACACACAAATCCAGACTGAGCAGACGGTTCACCTTCCAACAGGACAGTGACCCTAATCCCACAGCAAGAGTCGCTTAAAGACGACTCCCGTGAATGTTCTTGAGGGACCCAGCCACTGCCTGGGATTAAACCCAATCAGATGTtttctggagaaacctgaaCATGTGCATCTGCCCGTATCCAACCGGACCGAGCTAAACCGGACTAAAGCAGATTAACTTAAGGCAGCAacgtaaaatataaaagaaaataaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43565 lncRNA downstream 12373 17699424 ~ 17701373 (-) True G29408
TU43543 lncRNA downstream 71109 17642379 ~ 17642637 (-) True G29388
TU43360 lncRNA downstream 159782 17553762 ~ 17553964 (-) True G29273
TU43271 lncRNA downstream 364240 17349289 ~ 17349506 (-) True G29212
TU43231 lncRNA downstream 494293 17219151 ~ 17219453 (-) True G29179
XR_006250673.1 lncRNA upstream 15352 17732403 ~ 17733334 (-) True LOC122343157
TU43563 lncRNA upstream 26401 17743452 ~ 17744244 (-) False LOC122342228
TU43581 lncRNA upstream 32760 17749811 ~ 17814034 (-) True G29420
TU43586 lncRNA upstream 79021 17796072 ~ 17805409 (-) True G29425
TU43611 lncRNA upstream 100511 17817562 ~ 17817933 (-) True G29440
XM_043237470.1 mRNA downstream 223 17711195 ~ 17713523 (-) True LOC122343120
XM_043236812.1 mRNA downstream 75004 17637023 ~ 17638742 (-) True srd5a3
XM_043236813.1 mRNA downstream 77457 17631493 ~ 17636289 (-) True tmem165
XM_043236625.1 mRNA downstream 161400 17488260 ~ 17552346 (-) True daam1b
XM_043237864.1 mRNA downstream 233359 17411018 ~ 17480387 (-) True LOC122343418
XM_043237362.1 mRNA upstream 713 17717764 ~ 17719790 (-) True LOC122343057
XM_043236039.1 mRNA upstream 3097 17720148 ~ 17726796 (-) True LOC122342227
XM_043237338.1 mRNA upstream 11471 17728522 ~ 17731397 (-) True LOC122343038
XM_043237340.1 mRNA upstream 11471 17728522 ~ 17731154 (-) False LOC122343038
XM_043237339.1 mRNA upstream 11471 17728522 ~ 17731104 (-) False LOC122343038
TU43541 other downstream 75037 17637159 ~ 17638709 (-) False srd5a3
TU43209 other downstream 591617 17118628 ~ 17122129 (-) True xrcc3
TU43174 other downstream 695923 17006927 ~ 17017823 (-) True G29135
XR_006250655.1 other downstream 813451 16886974 ~ 16900295 (-) True prkchb
TU43020 other downstream 1004786 16707774 ~ 16708960 (-) True G29022
TU43577 other upstream 18299 17735350 ~ 17736274 (-) True G29417
TU43653 other upstream 253554 17970605 ~ 17979922 (-) True G29473
TU43941 other upstream 691509 18408560 ~ 18428343 (-) True G29653
XR_006250671.1 other upstream 939929 18656980 ~ 18661653 (-) True LOC122343054
XR_006250670.1 other upstream 939929 18656980 ~ 18661649 (-) False LOC122343054

Expression Profile