RNA id: XM_043237403.1


Basic Information

Item Value
RNA id XM_043237403.1
length 1687
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC122343085
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20640142 ~ 20644792 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGGGAGAATCCAGGTTTAGTTGTAGGGCCAGTTCTCCACCGCCCAGACAGAATTGTCTGGATAATGAGGTTTTGTGCCCATGGCCATGACCTCTTCACCCAAGGATCTGTCTCTGGGTCTCATCTAGGTGGTCTGGTTTCCACTGAGGATCAGGGCTGTAGAAGTGGACTCTAGCTCCTGATCCACCATCAGGTCTGGATACGGACTGGCTCTGGGATTGGATTAGTCACGCTTCGCCATCTGTATCTGCTATAGACTCATTGTATTGGTAGTTGTGATGTTAGAAGTAGATTTAtcgattattatttttacaaatttctcCATATTTAGGGCAGATCCACgaatgatatatttatgtttttacataatcTCCTGTAGCATCTAGAACTctataattttgttaaatgtatattttgtgctTAATTCTGAAATCCaataatctctctctttcattacACTAAACTCCAGTCCAGATAAGAAATGCCCCGACTACAGTCAGTGTTGATATAAATTCTGAAACAGGTGCGAGTGTAAATGCTCCTTTATTGACTGCGAACACCTTCACAGGACCAGTAACCATTTATGGCTCAAATGCTGAAGGAAACGATAAACAGAAATCCTCAGAGATGGCAGAggaacacagagaaaaacaagagctgcaaaactttttggaaactcacaaaacaaacatgaaggagaaaacaatatatttttgaggGCAACAAAGACAATGAAGCACAACTCAAGGCTATTTACACAGAACTGTTCATCACAGAGGGAGATATGAAAGATGTCAATCACGAACATGAGATTCTGAGGATTGATGATGCCTTcaagagcaaaaaaacacaGGACAAACTAATCATatctaatgatatatttactgaactGAGTAAAAACAATGAGAAAAAGATTGTGCTGACTAAAggagtcgctggcattggaaaaactgtctctgtgcaCAGGTTGATCCTGGACTGGGCCGAAGGAAACACCAATCAAGATATACACTGTGTGTTCCTgcttccattcagagagatTAACTTAATGACAAATGAAGATTTCAGTCTCCATGAGCTTCTGCTGGAATTTTATCCTGAACTGAATGACCTGGAGAAATCAAAGCTATATAAGGAATGTAAgatagcatttatatttgatggacttgatgagAGTCGCCTACctataaattttaaaagtagatcACTGAACACTGTTGAGAAAAAAGCATCTGTGGATGTGCTCTTTACAAGTCTGGTCAAAGGGACTCTGCTTCCATCAGCTCTTGTCTGGGTCACATcacgaccagcagcagccaatcagatccctccTCAGTATGTGGGTTTGTTCACAGAGGTGCGAGGATTCACTGACCAACAGAAGGAGGAGTACTTCAGAAAGAGATTCACAGATGAGAGTCTGTcctccagaatcatctcacacatgaAGATGTCTCGTAgtctctacatcatgtgccacattcctgtgttctgctggatcacagccacagtacttcaggatattctctctgagaacaatgaagagaacatcagcacaacactcactgaaatgtacattcacttcctgCTGATACAGATGGAAATGAAGAACCAAAAGTATGATGAACAAGAAGAAAGAGAACGTACAGAGCACTTacgaataaatgaaaaaaattttttaagttaG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44381 lncRNA upstream 10282 20630820 ~ 20631329 (+) True G29945
TU44363 lncRNA upstream 143743 20497097 ~ 20497868 (+) True G29927
XR_006250699.1 lncRNA upstream 179269 20459370 ~ 20462342 (+) True LOC122343178
XR_006250698.1 lncRNA upstream 181417 20459370 ~ 20460194 (+) False LOC122343178
XR_006250678.1 lncRNA upstream 198604 20440548 ~ 20443007 (+) False LOC122343162
TU44383 lncRNA downstream 465 20645257 ~ 20645535 (+) True G29947
TU44458 lncRNA downstream 140517 20785309 ~ 20785530 (+) True G30005
TU44456 lncRNA downstream 235657 20880449 ~ 20882908 (+) True G30003
TU44493 lncRNA downstream 265362 20910154 ~ 20975778 (+) True G30024
TU44494 lncRNA downstream 267766 20912558 ~ 20934912 (+) True G30025
XM_043236075.1 mRNA upstream 3000 20633884 ~ 20638611 (+) True LOC122342277
XM_043237273.1 mRNA upstream 82597 20543132 ~ 20559014 (+) True LOC122343005
XM_043236074.1 mRNA upstream 125982 20505411 ~ 20515629 (+) True LOC122342276
XM_043237472.1 mRNA upstream 164903 20470670 ~ 20476708 (+) False LOC122343122
XM_043237203.1 mRNA downstream 10423 20655215 ~ 20677909 (+) True LOC122342964
XM_043237174.1 mRNA downstream 145383 20790175 ~ 20800541 (+) True LOC122342951
XM_043237448.1 mRNA downstream 257427 20902219 ~ 20906726 (+) True LOC122343111
XM_043237467.1 mRNA downstream 272758 20917550 ~ 20918689 (+) True LOC122343116
XM_043236078.1 mRNA downstream 276643 20921435 ~ 20929163 (+) True LOC122342280
TU44357 other upstream 272795 20367675 ~ 20368816 (+) True G29921
XR_006250910.1 other upstream 393382 20248111 ~ 20248229 (+) True LOC122343930
unassigned_transcript_379 other upstream 534484 20107054 ~ 20107127 (+) True trnam-cau_25
unassigned_transcript_377 other upstream 535256 20106282 ~ 20106355 (+) True trnam-cau_24
unassigned_transcript_374 other upstream 537160 20104376 ~ 20104451 (+) True trnam-cau_23
TU44410 other downstream 51880 20696672 ~ 20706846 (+) True G29961
TU44534 other downstream 473770 21118562 ~ 21142831 (+) True G30058
TU44553 other downstream 524457 21169249 ~ 21170595 (+) False LOC122342286
TU44625 other downstream 723851 21368643 ~ 21761178 (+) False LOC122342301
TU44637 other downstream 743401 21388193 ~ 21630120 (+) True G30119

Expression Profile