RNA id: XM_043237417.1


Basic Information

Item Value
RNA id XM_043237417.1
length 2605
RNA type mRNA
GC content 0.38
exon number 6
gene id LOC122343092
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18933707 ~ 18937665 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATTGAGTTGAACTTCCTTTTTACATTAATACGtgaaacattttcacaaaaggAGTTCCTTTCTGCTTAAATACCGGTCACTATGGGAGAGAAACTAGTGTTAGTTGGTTGATATTGAAGCTGTCCGATAGCGTAAGTCTAAATACAGAAAAGgataaaactccaaaaatatGCAAAGAAGAACCTCATTAACTTCTAAGGAAATGAGGAAGCTGTAAGAGTCATCCAAGTCATCCAAGAAGCGACTGTAACCATTTCATCTGCACCAAAAATGTCTGGAACTGTGAATGGTGGTATGGATAAAGGTTCAATAATGGACTCGGAAGACCGGATAGAAAAGACTGTCGATATCTACATCACTGCAGAAGCTGTAAGAGACATGAAACATAAGAAAGACACTGAGGACATCAATGCAACAACCCTTAAAACAGCCCAACCTACAGGAAGTGATGGTGTGAAGATCAGGAGCTCCAGAGCAGCTGTGGTGTGTTTGGTGTTGCTGTGTGTTCTTCTGCTGACCGCGGTCACTGCACTGGGGGTGTACATCCATAAGACGGGCGCAAACTACGCAGAAGAGAGGCGGCAGCTGTTAAGCAACATCACCAACTTCGCAGAAGAGAGTCAACTGCTGTCAAGCGAAATCGCCAACCTCACAAAAGAGAAACAGTGGCTTCTAACCAACATTACCAACTTAATTCAGCTAAATGTACAGTTCAATCAAGAGAAAAACGAACTGATAAAGTTTTTTCAAGATGGATGGATTTACTATCAGTTCGGTCTTTACTACGTTTCCAATGAGACGAAGAACTGGACCGAGAGCAGAAGATACTGtacagagagaggagcagatcTAGTGATCATAgagaacagacaaaaacaaGATTATGTGAAGAAGATATCCAATGGAAGTGACGTCTGGATTGGTCTGACCGACAGTGAAGTAGAGGGAACATGGAAATGGGTTGATAACAGCACCCTGCCCTCTGGCTCTGGGTTCTGGAAACAAGGAGAACCTAATGGAGGTACAGATGAGAACTGCGCTTTCAGTGGTTCAGCAGGACTGTTTGATTATATATGTTCTAACCTTTTAAAATGGATCTGCGagaggaaaaatataaaatgacattattatttgcatatatgctggaacatttaaacatttttgacattttctatttttcactTACTACCATTAGCctataatgtaaaatactttttttaatattcaagtcttaggaatagtttaccccaaaattataattctgccattaattactgACACTCATGTTCTTCCAAATCCGTAAGATCTTCATCTATCTTTGGAACACAACTTAACATCATTTTGATAAAATCCGAGAGCTCTCTGATCCCCCCACAAGATCCTAACACAATCAAGGTCCGGAAACGTAGCAAGGACATCGGGTTCAACCAGAATTTTAGGAAGCTActagaatactttttgttttttcttgcattttcttttcagttttgttaCTGAATGATTCagcattttgaacaaatcagttcaATCAATGACTCACAagtgacttactgccacctactggtggttTAGGATGTTTAGGACAATTTCTTTTTGACGTGACATAATGACGCAGTACTGTGCTCGAATatcctgcaaaaaaaacaatgcataatTTTTCGCCACATACCACAAAAAATGATAGACCTGGAGTTGCCCAGATCCAGATTAAAGAGTTGACGGTGACTAGCCACTGGTGACGTTATCAATGAAACACAAAGATGCGAATGTTTTGCAACATGCCACAATTTGCTAATTTATTAGAAGGAAAAAAGATACAAGTTCTGTCATACATCTCGTGAAAAAGTAGCAAAAACAATGCAACGTTAGCACTGAATagtttttgtgcaaaacaaTTGCATAGTCAACACTGTTCGTATCACTAACAACGTAACTCACAAAATACAAAGTCTATAAGCCTACTCACTGTCAGAGTGATATCTTCAATTCGTATAAACCAATGAAAGgttagataaataaaataaaagatgaaaatgattaacaatgcagattcgTTTTCACTGTTTTCTGTGGACATATTTTCCAggggtgccaatacttttggcCATAAGTGTTTTTCAGCCacaattcgttttttttttccagcttcatctttagaaaaatatttccaCACACTTGATATGCCTCCGCTGCTTTGCTGCAATGTTGTTTCTGTCAAAATCACAGCAAAAAGCCTCATGTCGGAGCAGTAAAGTTGAGCAGTCTCCACACCCATGATTTGGTTTATTAGCAGGGGGCAtatcattggaaaaaaaattaagaatacattttagtacGAAAGTTTTTGATGAATCATGAGTTATTTGTGAAAACATGtttagtgaatgagacccattattttgtgtatttggtgtaaagCAGTTATATATCACTTTCCACATATTGTACATtgttgtttctcctctaagccttGCCTTTCTGTAATGCTTCAATCTGTACAAAGCTCATCTCAAGTGTGCGATAGAAATGTTACTCTCCTTCCTATAATGTGATGCTGTGTGCCAGcgctatgacacaaaaacaataaaagccattcaaaagagg

Function

GO:

id name namespace
GO:0042116 macrophage activation biological_process
GO:0002274 myeloid leukocyte activation biological_process
GO:0002376 immune system process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44148 lncRNA upstream 1017 18932319 ~ 18932690 (+) True G29777
XR_006250682.1 lncRNA upstream 25883 18903235 ~ 18907824 (+) True LOC122343164
TU43902 lncRNA upstream 118429 18814883 ~ 18815278 (+) True G29633
TU43888 lncRNA upstream 148461 18785045 ~ 18785246 (+) True G29627
TU43851 lncRNA upstream 268624 18662860 ~ 18665083 (+) True G29600
TU44169 lncRNA downstream 29722 18967387 ~ 18967714 (+) True G29797
TU44175 lncRNA downstream 108045 19045710 ~ 19053414 (+) True G29803
TU44189 lncRNA downstream 142103 19079768 ~ 19080189 (+) True G29809
XR_006250695.1 lncRNA downstream 432106 19369771 ~ 19371889 (+) True LOC122343175
XR_006250711.1 lncRNA downstream 468238 19405903 ~ 19406459 (+) True LOC122343189
XM_043237355.1 mRNA upstream 11197 18918600 ~ 18922510 (+) False LOC122343048
XM_043237353.1 mRNA upstream 11197 18918644 ~ 18922510 (+) True LOC122343048
XM_043237354.1 mRNA upstream 11197 18918644 ~ 18922510 (+) False LOC122343048
XM_043237213.1 mRNA upstream 18685 18908916 ~ 18915022 (+) True LOC122342974
XM_043237394.1 mRNA upstream 35917 18894901 ~ 18897790 (+) True LOC122343078
XM_043237335.1 mRNA downstream 13062 18950727 ~ 18953599 (+) False LOC122343037
XM_043237337.1 mRNA downstream 13259 18950924 ~ 18953599 (+) True LOC122343037
XM_043237336.1 mRNA downstream 13259 18950924 ~ 18953599 (+) False LOC122343037
XM_043236046.1 mRNA downstream 22997 18960662 ~ 18962974 (+) True LOC122342236
XM_043236049.1 mRNA downstream 126360 19064025 ~ 19067883 (+) True LOC122342238
TU43926 other upstream 47305 18883179 ~ 18886402 (+) True G29642
TU43756 other upstream 472390 18436460 ~ 18461317 (+) True G29545
TU43729 other upstream 632518 18300415 ~ 18301189 (+) True G29526
TU42966 other upstream 2459326 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 2947981 15985219 ~ 15985726 (+) True G28899
TU44195 other downstream 352555 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 793597 19731262 ~ 19786128 (+) False G29835
TU44230 other downstream 808076 19745741 ~ 19747442 (+) False LOC122343071
TU44267 other downstream 1100273 20037938 ~ 20040195 (+) False LOC122343063
unassigned_transcript_309 other downstream 1124989 20062654 ~ 20062727 (+) True trnam-cau_2

Expression Profile