RNA id: XM_043237420.1


Basic Information

Item Value
RNA id XM_043237420.1
length 1847
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC122343094
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21318814 ~ 21322095 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGCGCTCGCGCGTCTGATTCGGCTGACGGACAGGTGTGCgctttttttaagtgtttaaatccATCCAGATGAAGAACTGCACTCATCCTCGACTAGTGCCGTTACAGAGGGTTACTTTCTGCGAGTGATGTGCACGAGGAAAAGGAACGGAAAAAGTGTCTGCACACGAGTGTAAAGATGGTGTttgttaaagaggagagtgaagacgTGAAGATCGAAGAAACACGAGTCAAACGTGAAGATGCCGAGGAACAAACAGAGATGGAGTTTATTAAAGAAGAGAGTAAAGACGTGAAGATTGAAGAAACCTTGAGAGTCAAACATGAAGATAGCGAAGAACAAACAGaccCGACGGCACTAAACGAGAAGAGTCAAGAACCGAACGGAACGGAGGAGAAACGTCAATTTGACAATCAGCATGATTTTAAACCGATTGGTTGGGTAAAAACAATCAACGGCAAAACAATCTCGAGAAACGCAAAGCCTCAATTCCCACTTAAGAGTAGGTCCCGGAGAGAGACCGTACGCCTGTCAGCACTGCGGCGAAATGTTCAGTCAAAAAGAGAGCCTTAAAGTCCACACGAAAGCTCACGCGGAAAAGAAACCGTTCGTATGCTCTCTGTGCGGACAGAGCTTTACACGGGAGAGTCACCTTATTATCCACACGAGGATCCACACGGGAGAGAGACCTTTCGCCTGCGagcagtgcgggaagagtttcagaCGAAATGGAGATCTCAAGACTCACATGACGATACACACCGGAGAGAGACCGCACACCTGCACCGAGTGCGGCAAGTATTTCACccagaaaaaaaaccttaaagtGCACACgagaattcacaccggagagaaaccgtacaCCTGCCAGCTGTGCGAGATGAGCTTCCTACGGAGCGGAGGTCTCCGGAGtcacatgagagttcacaccggagTGAAGCCTCACGCCTGTAAACTgtgcggaaagagtttcacGCGTCGTGAGAACTTCACGTCTCACATGAgggttcacaccggagagaggcCGTTCGTGTGCGTTCTgtgcggaaagagtttcagCTACAAGGAAAGCCTCAATTATCACACGGCGCTTCACTCGAGAGAAAACCGCTTTAAATGCCAGCAGTGTCAAAGTCGTTTCGCGGACGCGAGTCGCCTCGAGGATCATGTTCGAATTCACGTCGGAGAAAAGCCGTTCATGTGCCGTCACTGTGGGAAGAGTTTAAAAAACAGCTCGAAGCTTGAGATCCACGCAAGAGTTCACACGGGAGAGAAATCGTTCgcctgctctcagtgtggaaagagtttcacggTAAAAAGGAACCTAAAGGTTCATGAGAATTTACACAGGAGGAAGATTCACCAATCCAAGCAAGCGGAAATCACTTGCTAACTCATTTCAGTAAGAAATTGCAGTTCTTCTCCAAAAAGGAGCAGCAACTTTTTGATTTCTACTTTCTCGTTTCTTTAGAAAGGTATTACGTTAAAAGTAATATCCCGATTTTGAGACTATCTTCGTGATTGTATGACATTTGAACTCCTTCTGATGGGTCTCGTTTTTAGATTTCTTGAATATTTTACTAACTCAAGAGTTCCTCCTACACAACACTCGAAGATGTACAAATCTCCTAACTAAAGAAACCAATGGTTGGATATCGAAAACTGGTTCCATTTTAGAAGCAGGTTAACATTTCCAAGAACTAGTTATTTGATAAGTTGGTTTATCAGGAGTATATTGGTTAAAAACGTAGGTAAAAGTTCCTATTGTGTGTtcggtgttgtttttttcatgttatttatcTGCAATTGAATGCTTtgtaaaaagacaataaatctGCTGTCTGTT

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0043169 cation binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44981 lncRNA downstream 39771 21276222 ~ 21279043 (-) True LOC122343113
TU44930 lncRNA downstream 192743 21117815 ~ 21126071 (-) True G30343
TU44875 lncRNA downstream 250626 21065914 ~ 21068188 (-) True G30301
TU44912 lncRNA downstream 265160 21052978 ~ 21053654 (-) False LOC122343098
TU44899 lncRNA downstream 344749 20972276 ~ 20974065 (-) True G30317
TU45004 lncRNA upstream 56504 21378582 ~ 21765825 (-) True G30394
TU45015 lncRNA upstream 73294 21395372 ~ 21783591 (-) False LOC122343153
TU45027 lncRNA upstream 170186 21492264 ~ 21492907 (-) True G30406
TU45029 lncRNA upstream 177560 21499638 ~ 21499998 (-) True G30408
XR_006250701.1 lncRNA upstream 346732 21668810 ~ 21673424 (-) False LOC122343179
XM_043236087.1 mRNA downstream 4844 21309532 ~ 21313970 (-) True LOC122342290
XM_043237236.1 mRNA downstream 30492 21282287 ~ 21288322 (-) True LOC122342980
XM_043237462.1 mRNA downstream 39771 21276223 ~ 21279043 (-) False LOC122343113
XM_043237453.1 mRNA downstream 39771 21276223 ~ 21279043 (-) False LOC122343113
XM_043237456.1 mRNA downstream 39771 21276223 ~ 21279043 (-) False LOC122343113
XM_043237491.1 mRNA upstream 5537 21327615 ~ 21336881 (-) False LOC122343135
XM_043236089.1 mRNA upstream 59714 21381792 ~ 21383191 (-) True LOC122342292
XM_043237508.1 mRNA upstream 65775 21387853 ~ 21396905 (-) True LOC122343153
XM_043237304.1 mRNA upstream 162703 21484781 ~ 21487205 (-) True LOC122343027
XM_043236092.1 mRNA upstream 165127 21487205 ~ 21495229 (-) True LOC122342296
TU44338 other downstream 1036414 20281106 ~ 20282400 (-) True G29906
TU44333 other downstream 1080260 20237137 ~ 20238554 (-) True G29902
unassigned_transcript_385 other downstream 1102575 20216160 ~ 20216239 (-) True trnal-aag_28
unassigned_transcript_384 other downstream 1104482 20214249 ~ 20214332 (-) True trnal-aag_27
unassigned_transcript_383 other downstream 1105492 20213241 ~ 20213322 (-) True trnal-cag_25
TU44972 other upstream 5638 21327716 ~ 21330093 (-) True LOC122343135
TU45006 other upstream 61391 21383469 ~ 21386437 (-) True G30395
TU45009 other upstream 61391 21383469 ~ 21385978 (-) False G30395
TU45011 other upstream 307539 21629617 ~ 21776806 (-) True G30396
TU44977 other upstream 415013 21737091 ~ 21740330 (-) True G30372

Expression Profile