RNA id: XM_043237428.1


Basic Information

Item Value
RNA id XM_043237428.1
length 2399
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC122343101
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 22685702 ~ 22689679 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCGAAAAAAggtgtgtgcttttattaatttaaaagcgTTTAAATCAATGTGACACGTGCAGAAAATTAGACATAACCCGTGCGGCTCGATAGCTTAAAGCAACACTTGAATGTTTTATCTGGTGACTTTAAGGACGAGGAATCATCTGAGATCCATGTGACACAACGTTATAACGATGGTGTTTATTAAAAAGGAGACTGAAGACGTGAAGATTGAAGAAACCTTTGGAGTCGAACACGGAGATGctgaggaacaaagaaagatGGTGTTCATTAAAGTGGAGAGTGAAGAGATGAAGATTGAAGTCAAACATGAAGATACCgaggaacaaacagACCTGATGAGTGGAGAACTCATTGAAAAGGAAGATAAAGATCGGCACGAGAAACCTAATTTCACGTTTAGTTGCTCACAGACCGAAAAGACGTCCTCGCAAGAAAGAGCTCAAAAGGCTAGAAGTGCGGGTCActtcacctgccaacagtgtggaaaacaTTTCAACAGGAGAGGAAACCTCAATTaccacatgagaattcacaccggagaaaaGCCTCACACGTGCCCTCAGTGCGGGACGAGTTTCACTCAAAAAGTGATCCTCGATAGGCACATTAGAGGCCACACCGGAGAGAGGCCCTACAGCTGCAAGCTGTGCGGAAAGAATTTAATGCGGAAAGCAAACCTCAAAAACCACATGAGAATTCATACCGGAGAGCAGCCCTACACCTGCCCGCAGTGCACGAGGACTTTCCTACATCAGCAAACTCTCAAGTACCACATGAGGACTCACAACGGAGAGAAACCCTTCGCCTGCCCTCACTGTGGAAAGAGCTTCGCCGGAAGAGGAAACCTCGTGGTCCACACAAGGATTCACACGGGAGAAAACCCGTTCACCTGCCCACAGTGTGGGAAAGGTTTCTCTCAGAAAGGAAACCTCAAAAGACACATGAATGCACACTGAAAAGAAGCTGTGAGAGGTTGCTCCACAGACACTTCATTGCAGTTCATTGATCTGCAGCGGGACAATGTTATGTTTACAGTGATTGTCCATAATGTCTATCTTAGATAGAGGGTATCCCTTAGATATGCACATTTGGTTTCTTCTTGCATTTGcgtgtagattttttttttctttctcacgacaaaaaaagcattcaagCCACCGTTTATTCTCAGTGAAACTGTCCGACTCTTCACAACTATATCGTGTGAGGCCTCACGTGCAAAATTATCTATtcgatttttaaaatctgtcatatattctgtaaaaatCTGACATGGAATGTTAATAATATCTGCTAAGTTGGCTAATGGCTTGTCACTGTAATGAAATGGAGTCACGATCATGATAGTTGCTACAATTGTTGAGAAATATAATGTAGCAATTCGGTATCTGCgctatttttcataatattagtCCCGAGTCATTTCTGTGTGGAATATGATCTAAGGAATCAACTTACATATGCATATGTCATAAGGTGCTGTTTGAAAGGCCATGATTTTGTGTATTGGCTGTAACAGAATATGTCGACATGCTTTAAcattcaaaaaacataatttttcaaGTACTGTACATTAAAGTAGCTCCTCTGCCCCGCCTCTCTCAAACGCGTCATTTTCTACAAAGCCCCTCTTTCCGATATGCACAGTCTGCTATGATTGGCCAGTTCacacagtgcattgtgatttGGACAAACACCAGCTCTGCTAACCCCAAGCCTACTTTCACAGATGTTTCAGGAGTTTAGGCTAATTTGATAACTGGTTTGGATTCAATTCAAATTTCTATTTGGGTTTATGCatgtattctttaaaatgttaactgtTTGTTGTCATAGCTAtgcaaagatttaatttaaaaaaaaaaaaaaaacagtatcatagCTATTAAAGTACATCTCATGATTACAAATCTATTCAATCACAAAGTAAAAAGAGCTGCTAAAGTGGTAGATGgggtttaaaatgtaattatcagcaactgtaattagttacatttagtcatttaattatGCAACGTCATTACATGTAACTAGTGCAGATGAACTAGTTCATGAATGCATAACCTTAACACTGGTCTACTGTAATGCATGTACTTCACTAGAAAAGCTACAGTTAGTCCAAAATTCAGCAAAGCattcacataaaatatatatcataacCTTATACTCCAGTTTTTAAGAAACAgtaagccaggttaaagagattcatttttaatctccatttaaaatgacaaagtgTGTCTGCCCCCCTGAACAGTGTTAGGTAGATTGTTTTAGAGTTTGGATGCTAAATAAGTCAaggagttttgagaacgcatcAGACATGAAGGCATATAATGTGATAAAAGCTTGCCCAAGTactagctgctgcattttgggcAGGTTAGACTTTA

Function

GO: NA

KEGG:

id description
ko00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250726.1 lncRNA upstream 134390 22550101 ~ 22551350 (+) True LOC122343204
XR_006250689.1 lncRNA upstream 141909 22542511 ~ 22543831 (+) True LOC122343169
XR_006250715.1 lncRNA upstream 144255 22540384 ~ 22541485 (+) True LOC122343193
TU45207 lncRNA upstream 152708 22532415 ~ 22533032 (+) True G30528
TU45205 lncRNA upstream 179548 22505255 ~ 22506192 (+) True G30526
TU45301 lncRNA downstream 114359 22804038 ~ 23246017 (+) True G30598
TU45303 lncRNA downstream 118309 22807988 ~ 23249868 (+) True G30599
TU45312 lncRNA downstream 163802 22853481 ~ 22869703 (+) True G30607
TU45317 lncRNA downstream 168611 22858290 ~ 22861570 (+) True G30609
TU45335 lncRNA downstream 317295 23006974 ~ 23126523 (+) True G30624
XM_043237292.1 mRNA upstream 11969 22661826 ~ 22673771 (+) True LOC122343019
XM_043237204.1 mRNA upstream 63854 22613115 ~ 22621886 (+) True LOC122342965
XM_043237494.1 mRNA upstream 123977 22548617 ~ 22561763 (+) True LOC122343138
XM_043237291.1 mRNA upstream 239462 22434054 ~ 22446278 (+) False LOC122343018
XM_043237257.1 mRNA downstream 6121 22695800 ~ 22706494 (+) True LOC122342996
XM_043237258.1 mRNA downstream 6121 22695800 ~ 22706494 (+) False LOC122342996
XM_043237259.1 mRNA downstream 6219 22695898 ~ 22706494 (+) False LOC122342996
XM_043237261.1 mRNA downstream 50281 22739960 ~ 22748620 (+) True LOC122342997
XM_043236110.1 mRNA downstream 88304 22777983 ~ 22780139 (+) True LOC122342317
XR_006250667.1 other upstream 3028 22661826 ~ 22682712 (+) False LOC122343019
TU44785 other upstream 384221 22296897 ~ 22301519 (+) False LOC122342310
TU44767 other upstream 453816 22231470 ~ 22231924 (+) True G30218
TU44630 other upstream 1043984 21639540 ~ 21641756 (+) True G30115
TU44637 other upstream 1055620 21388193 ~ 21630120 (+) True G30119
TU45293 other downstream 88363 22778042 ~ 22779597 (+) False LOC122342317
TU45355 other downstream 439427 23129106 ~ 23130189 (+) True G30636
TU45351 other downstream 467880 23157559 ~ 23159756 (+) True G30632
TU45341 other downstream 474090 23163769 ~ 23167257 (+) False LOC122342321
TU45342 other downstream 474090 23163769 ~ 23167257 (+) False LOC122342321

Expression Profile