RNA id: XM_043237431.1


Basic Information

Item Value
RNA id XM_043237431.1
length 1202
RNA type mRNA
GC content 0.40
exon number 8
gene id LOC122343102
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18805450 ~ 18809963 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCACCTGAGCTCCACCTGCTTCCCCTTTGATTCTGGGAAAAGGTATAAGCAATTGCTCTTGACAGAATTTGCATTGGCTTGTCTCAGACGGGTGGACAGAACTTTAGGGTCAATTTCAGATCCTGAAACGAGAATGTCGTCCGCCATACCCCTGAATTCATTCATCATCCAGCTGCAACCTCCGATACAAACAACAGCGGTTGGGACCGCCACGAATGCTCCTGCGCCCGTTTATGTCCAGCAGGTAGCAGGACTATCATCTCTTCATGGACTTCAGGCATTTCTGACAGGCCAACCGAAAGCTCTCGGGTCTGTCCAGATAATGATTGGCCTGATGACTCTCCTGTTTGGCATTGTGTCAACATTTTATGCAGAATCCATCTTTGTCTATAGTGGTATTCCTTACTGGGGATCCATCATTTACATTATTGCAGGATCGCTCTGCGTTGCTGCAGAAAACAAAGTTAATTCAGCCTCCAGTTTGTGTTTGGTGAACGGTTCACTTGGAATTAACATTTTCAGTGCTTTAACCGCAGGCATTGCTCTTATTTTACTTTCACTGGATTTGGTTATAGCACAGTTCAATATTTCCCCTTACTGCAACGATTCTACATGTTATTATGTTAATGGAAAATATAAGACCCTATTCTACGGAATCAGAGGTGTATTGCTGTTATTCACCTTCCTTCAGTTTATCATCTCTATCTGTTTGTCAGCGTTTGCCTGTAAGGTCTCCTGTTGCTGTTGTCCTCCTCAGGTGCCATTTGTTCCTCAGGTTTTAAATCCACAGCCCCCTGATTTCAAGACCAGTAATTTCCATGATCTTAAAAGTTCAGAGatacCTGTTGTCTGCAGCTCTTCTATGAACAACCATCATGTGGACAATCTCCCAAAATACAGTGAATgccaataaataataacaagtGGGCAAAGTTTGGACCTGAAAGTTGTGTGTGATGCTTTCGTAGGACACATGGGTTATTTGCAATTGTTTTCTGTCCATTATCTTTAATACCCTATCATCATTTTAtcagataatatttttttaaacgacaTTTGTGAACAAAACATGTTGAAGATTAGATGCTATTTTGtgattttctgtcttttattaaGTTGCATAATCTGATTGTTTTAAGCAACTATAATAGCttatctgtaaaaataaatgatacagaattaaaaatttgcttaaaactga

Function

GO: NA

KEGG:

id description
K22190 MS4A3S; membrane-spanning 4-domains subfamily A member 3/4/8/12/15/18

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43888 lncRNA upstream 20886 18785045 ~ 18785246 (+) True G29627
TU43851 lncRNA upstream 141049 18662860 ~ 18665083 (+) True G29600
TU43831 lncRNA upstream 202816 18600428 ~ 18603316 (+) True G29591
XR_006250718.1 lncRNA upstream 212016 18591447 ~ 18594116 (+) True LOC122343196
TU43761 lncRNA upstream 340295 18441631 ~ 18465837 (+) True G29548
TU43902 lncRNA downstream 4920 18814883 ~ 18815278 (+) True G29633
XR_006250682.1 lncRNA downstream 93272 18903235 ~ 18907824 (+) True LOC122343164
TU44148 lncRNA downstream 122356 18932319 ~ 18932690 (+) True G29777
TU44169 lncRNA downstream 157424 18967387 ~ 18967714 (+) True G29797
TU44175 lncRNA downstream 235747 19045710 ~ 19053414 (+) True G29803
XM_043236045.1 mRNA upstream 23322 18758554 ~ 18782810 (+) True LOC122342235
XM_043236044.1 mRNA upstream 151027 18646798 ~ 18655105 (+) True LOC122342234
XM_043237266.1 mRNA upstream 159204 18634109 ~ 18646928 (+) True si:ch211-166e11.5
XM_043237265.1 mRNA upstream 173695 18627425 ~ 18632437 (+) True LOC122343000
XM_043237281.1 mRNA downstream 897 18810860 ~ 18814594 (+) True LOC122343011
XM_043237280.1 mRNA downstream 897 18810860 ~ 18814594 (+) False LOC122343011
XM_043237200.1 mRNA downstream 13962 18823925 ~ 18832593 (+) True LOC122342961
XM_043237361.1 mRNA downstream 55890 18865853 ~ 18869783 (+) True LOC122343055
XM_043237394.1 mRNA downstream 84938 18894901 ~ 18897790 (+) True LOC122343078
TU43756 other upstream 344815 18436460 ~ 18461317 (+) True G29545
TU43729 other upstream 504943 18300415 ~ 18301189 (+) True G29526
TU42966 other upstream 2331751 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 2820406 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 2964277 15841372 ~ 15841855 (+) True G28891
TU43926 other downstream 73216 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 480257 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 921299 19731262 ~ 19786128 (+) False G29835
TU44230 other downstream 935778 19745741 ~ 19747442 (+) False LOC122343071
TU44267 other downstream 1227975 20037938 ~ 20040195 (+) False LOC122343063

Expression Profile