RNA id: XM_043237438.1


Basic Information

Item Value
RNA id XM_043237438.1
length 1373
RNA type mRNA
GC content 0.37
exon number 8
gene id LOC122343105
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24648967 ~ 24653215 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACAAAAATGAAGGTGACTAAAGGAGGAGTGAGAATGAGCCAATCGCAGCCATCTGGTGTCTGAACAGTCAGGAAACTGACAGGTAAACCGAAACTAAGCCAAAAACTGATCGGTCAGCTGGAGATTGAAGCAGAATGTCTCAAACTGTCATTCCCATGAACTCTTCGACGCTCATCATACAGTTTCAACCGGCAACACAAACCGCTCTTGTTACGACACTCAATGGTTTAAATGTACAAGAGCCGGCAAGAGCTTCGCTTCGTCAAAGATTCCAGAAATTTCTAAGACGACAACCAAAAGCCCTTGGGACGGTCCAGATAATGATCGGTTTGATGACTCTCCTGTTTGGCATCGTATCTTCGGTTTATGCAGACACTATCTTTGTCTACAGCGGTTGTGCTTACTGGGGATCTCTCATCTACATCATCACAGGTTCACTCTGCATTGctgcagaaaataaaatcaattcacCCTCCAGTTCATGTTTGGTGAATGCATCATTTGCAAtgaacattttcagcattttaaccACACTCGTTGCCATGACTTTAATTTCAATGGATTTGCTTATAGGGTCAATGAATGCCTTCTGCCGTGGATTTAACTGTCGTTATTCAGATAGAAGATACGAGTCTTCCTTCATGGGGTTTAGAGGTGTATTGTTGTTATTCACCGCACTTGAGTTTATcatctccatctgtctgtcaaCATTCACCAGTAATTGCAACAACTGCTGTTCAACTCGGGTTTTGCCACCACAGCCATCTGATTTCATGCCGGTTCATTTAGATGATTTTCAAAGCTCTGAGATCCCTGTTTCCATCAGCTATACCATCCCTGAACTGCCTACAGACCCTCCTCCACAAtacactgaataaaacatgagaaaaaaaaaagttcccttAAGAAACAAGGCGATATATTGGAAGATATGTGATGCAATATGTAGtttatttatcataaatgtagaagtattattatataaacataatattggTTTATAATTAAAAGAATGATGACATGTACATATGTATTATACACACGTTATTACTTAAATATGGTTACATTCAGTATGAAAAGCATTATTCCTTATTGCATTACTCTATATTGAATAATGGATATTATTCAGTGTACTATCAATATACATTAAAcaagttaatatattaatgattaatataCAAGATGatatgttttcatgtttaaGGGTATTGTTTCTGCAGTTGTGTGACATTTGTTTCCCCACTCTCCATTATCTTCACGTTGTGCTTATAAAATAGGAAACATTTCCTGGTCTTGAATAGTTTATACACatgatataaaaagaaaaagaaaaaataatttttaagttgTTCAAGTTGTTCAAACCTTAAAA

Function

GO: NA

KEGG:

id description
K22190 MS4A3S; membrane-spanning 4-domains subfamily A member 3/4/8/12/15/18

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45650 lncRNA upstream 10313 24636364 ~ 24638654 (+) True LOC122343159
XR_006250675.1 lncRNA upstream 10701 24636352 ~ 24638266 (+) False LOC122343159
TU45587 lncRNA upstream 162080 24456022 ~ 24486887 (+) True G30812
XR_006250692.1 lncRNA upstream 229399 24417843 ~ 24419568 (+) True LOC122343172
TU45594 lncRNA upstream 334679 24313194 ~ 24314288 (+) False G30819
TU45666 lncRNA downstream 19752 24672967 ~ 24673594 (+) False LOC122343086
TU45676 lncRNA downstream 61482 24714697 ~ 24714998 (+) True G30877
TU46134 lncRNA downstream 335652 24988867 ~ 24989274 (+) True G31223
TU46137 lncRNA downstream 661008 25314223 ~ 25314596 (+) True G31226
TU46139 lncRNA downstream 661964 25315179 ~ 25315553 (+) True G31228
XM_043237478.1 mRNA upstream 2366 24639089 ~ 24646601 (+) False LOC122343125
XM_043237169.1 mRNA upstream 29576 24607037 ~ 24619391 (+) True LOC122342946
XM_043237238.1 mRNA upstream 43150 24595853 ~ 24605817 (+) True LOC122342982
XM_043237279.1 mRNA upstream 67173 24577163 ~ 24581794 (+) True LOC122343010
XM_043237321.1 mRNA upstream 74535 24569118 ~ 24574432 (+) False LOC122343032
XM_043237419.1 mRNA downstream 8614 24661829 ~ 24665576 (+) False LOC122343093
XM_043237418.1 mRNA downstream 8669 24661884 ~ 24665576 (+) True LOC122343093
XM_043237436.1 mRNA downstream 14491 24667706 ~ 24672151 (+) False LOC122343104
XM_043237437.1 mRNA downstream 14526 24667741 ~ 24672151 (+) True LOC122343104
XM_043237405.1 mRNA downstream 19676 24672891 ~ 24674412 (+) True LOC122343086
TU45653 other upstream 2396 24640129 ~ 24646571 (+) True LOC122343125
TU45649 other upstream 10313 24636364 ~ 24638654 (+) False LOC122343159
XR_006250668.1 other upstream 178100 24465454 ~ 24470867 (+) False LOC122343023
XR_006250669.1 other upstream 182567 24454325 ~ 24466400 (+) False LOC122343028
XR_006250666.1 other upstream 507556 24133050 ~ 24141411 (+) False LOC122342990
TU45681 other downstream 68209 24721424 ~ 24728447 (+) True G30882
XR_006250558.1 other downstream 90633 24743848 ~ 24767552 (+) False LOC122342408
XR_006250648.1 other downstream 981827 25635042 ~ 25684620 (+) False LOC122342771
XR_006250647.1 other downstream 981830 25635045 ~ 25688230 (+) False LOC122342771
TU46238 other downstream 1040587 25693802 ~ 25695381 (+) True G31298

Expression Profile