RNA id: XM_043237439.1



Basic Information


Item Value
RNA id XM_043237439.1
length 1137
RNA type mRNA
GC content 0.38
exon number 11
gene id LOC122343106
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21870415 ~ 21878792 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CCATTATTCAGACAGACACTCTTCACTGACTATTGtcagATCTTCTGTGAGGTTCAATCCAGCAGTCCAGaTAACTAAACAGTTGTAAAGGGCTTCATTGTCTAAAGTCAATTAGAAACATGGGTGATGTCAAGaatctACAGAAAAGAAGCTATCAGAATCTCCCTGATGACAGTGACTCTTCAGATGAGACAGTTGAATCTCCTTTACTGAAACGAGTTTTTGAAGAACATGGATACACCAAAATAGGACAACTGGGACGAGGGATTTCAGGAATAGTGTATCAGGTGACCAACAATTCTGGAGAGCATTATGTGATTAAACAGATGAACTCCAGAGAAAGGAAGGAGCAGAACGCTGTCCAAATGGAAGTCATGATCCTAAAGAAAATGATCCATGGATATATTGTTTCTTATGTGGAATCATTTGAAGATAAAGAAACTGGACTCTTTTATATTGTGATGGAGTATTGTGCGGGAGGAGATCTTTACAAGAGGATGAAAAAGCAGGCTGAGGAAGGCTTTTTTGAAGAACAACAGATCCTTGACTGGTTTGTTCAGATTTGTCTGGCCCTTCAGTATCTACACGAGGAGAGGAGGGATATTTGTCACAGAGACATAAAACCTCAGAATGTTTTTCTGACTGAAGATGACTACATCAATCTAGGAGACTTTGGATACTCAAAAGTGCACACAAGAGCTGATCCTTATGCAAGCTCTGTAGTAGGTGCAGAGCTCTATGTCAGCCCAGAAGGTCATCAGAAGAAATATAATTCCCCAAGtgaTATTTGGTCATTGGGATGGTTACTCTATGATCTCTGCATGCTGGATGTATGGGtgagtatgtttatttttccatcttaagaaacactaaataaataaatattaaataatgtaaattataacaGCTTGTGCTTAACATCTGGGGCCAGATTTATGAAAGAAGTTTAAAACAAGTGCTACCAAATAAGACAGGTTTGTTTCAGTTAGTCTGATTTATTGTCAGTTGATTTGGTTCAAATTATAACAGACTAACTAAAATAAGGCTTGCTTATTTGGTGTTTTGAGTaatcatttattgtaaaaaaaagttgctcTGAGAGGCAGCTGAATTTCCATAGCAGGCCACCCCTCTGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU45059 lncRNA downstream 60798 21676876 ~ 21809618 (-) True G30423
TU45070 lncRNA downstream 98216 21769579 ~ 21772200 (-) False LOC122342302
TU45062 lncRNA downstream 194285 21673723 ~ 21676131 (-) True G30425
XR_006250701.1 lncRNA downstream 196992 21668810 ~ 21673424 (-) False LOC122343179
XR_006250700.1 lncRNA downstream 196992 21668810 ~ 21673424 (-) True LOC122343179
TU45132 lncRNA upstream 401880 22280672 ~ 22281189 (-) True G30465
TU45173 lncRNA upstream 480425 22359217 ~ 22421953 (-) True G30499
XR_006250717.1 lncRNA upstream 517726 22396518 ~ 22398023 (-) True LOC122343195
TU45181 lncRNA upstream 546800 22425592 ~ 22428757 (-) True G30506
TU45193 lncRNA upstream 607983 22486775 ~ 22487119 (-) True G30518
XM_043236101.1 mRNA downstream 10132 21847120 ~ 21860284 (-) True LOC122342306
XM_043236099.1 mRNA downstream 89797 21775098 ~ 21780619 (-) True LOC122342303
XM_043236098.1 mRNA downstream 98017 21769124 ~ 21772399 (-) True LOC122342302
XM_043236095.1 mRNA downstream 133875 21714679 ~ 21736541 (-) True LOC122342300
XM_043237333.1 mRNA downstream 207595 21655902 ~ 21662821 (-) False LOC122343036
XM_043237393.1 mRNA upstream 356965 22235757 ~ 22239007 (-) True LOC122343076
XM_043237479.1 mRNA upstream 437116 22315908 ~ 22320097 (-) True LOC122343126
XM_043237170.1 mRNA upstream 446718 22325510 ~ 22334793 (-) True LOC122342947
XM_043237171.1 mRNA upstream 507071 22385863 ~ 22395600 (-) True LOC122342948
XM_043237275.1 mRNA upstream 550282 22429074 ~ 22431623 (-) True LOC122343006
TU45011 other downstream 93610 21629617 ~ 21776806 (-) True G30396
TU44977 other downstream 130086 21737091 ~ 21740330 (-) True G30372
TU45006 other downstream 483979 21383469 ~ 21386437 (-) True G30395
TU45009 other downstream 484438 21383469 ~ 21385978 (-) False G30395
TU44972 other downstream 540323 21327716 ~ 21330093 (-) True LOC122343135
TU45110 other upstream 249662 22128454 ~ 22245160 (-) True G30450
TU45123 other upstream 337243 22216035 ~ 22216470 (-) True G30457
TU45768 other upstream 1556188 23434980 ~ 23437015 (-) False LOC122342328
TU45855 other upstream 1618337 23497129 ~ 23546369 (-) False G31017
TU45890 other upstream 1866694 23745486 ~ 23771768 (-) True G31050

Expression Profile