RNA id: XM_043237441.1


Basic Information

Item Value
RNA id XM_043237441.1
length 1995
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC122343107
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 23725752 ~ 23727918 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGgaaaaacagtgagaaaaaaTTGTTCTCACTAAGGGCatcgctggcattggaaaaactgtctctgtgcacaagttcatcctggactgggcagaaggaaaagccaatcaagatatacagtgtgtgttcctgcttccattcagagagatTACCTTAATGACAAATGAAGATTTCAGTCTCCATGAGCTTCTGCTAGAATTTTATCCTGAACTGAAGGACCTGGAGAAATCAAAGCTATATAAGGGATGTAGGctagcatttatatttgatggacttgatgagAGTCGCCTGTCTCTAAATTTTAATAGTAGATCACTGAACACTGTTGAGAAAAAGCATCTGTGGCTGTGCTCTTTACAAGTCTGGTCAAAGGGACTCTGCTTCCATCAGCTATTGTCTGGGTAACATCgcgaccagcagcagccaatcagattcctcCTCGGTATGTGGGTTTGTTCACAGAGGTGCGAGGATTCACTGACCAACAGAAGGAGGAGTACTTCAGAAAGAGATTCACAGATGAGAGTCTGTcctccagaatcatctcacacattaagacgtctcgtagtctctacatcatgtgccacattcctgtgttctgctggatcacagccacagtacttcaggatattctcactgagaacaatgaagagaacacaacactcactgaaatgtacattcacttcctgCTTATACAGATGGACATGAAGAGCCAGAAATATGATGATCAACAAGAAAGAGAATGTTCAGAGcacttacttttaaataaagagattattttaatgttagcCAAGTTAGCGTTTGAACAGCTGAAGaaggaaaacattgtgttcGATAAGAAAGATTTAAAAGAATGTGGTATTGATGTGAGTAAAGACACTGAGTTCACAGGAATGATCGCTGAGATCTTCAGAAGGAACAAAGACTTCATGGAGCAAAGGTCTTCAGCTTTGTGCATCTGAGTGTTCAGAGTTTCTtgctgcagtgcatgtgttCACCTGTTACCTAAACAAGAACATGCAGGagcttcagtttttctttgatgagccaaaagaaaatgtcacattGGAGGAGTTACTGCAGAAAGCCATTGAAAAAGCCATGGAGAGTCACAGAGGACATCTGGATTTGTTCCTGCGGTTTCTGATGGGAATTTCACTGGAATCCAGTCAAAATCTGCTCAAAGGCCTGATCACACACCCTGAAGACACCACAGAGAGCATCAAAGAAgtaactaaatgtattaaacaaaaacaaaacacatactTTATCTCAGATGAAGCTCtagtcaacttattctactgcTTACTTGAACTCAAGGATAATTCATTATATGAGGAAATACAGAGTTACctcagttcaaatgaacatccaGGAAGAGATCTCTCATCTTCAATGTGCACAGTGTTGACCTCAGTACTGCTGATGTCAGAGAAGGTTCTAGATGAGTTCAACCCAAAGAGGTTCACATCAGAACAATCAGACTACAAGAGACTCATTCCAGCtgtgagatgctgcagaaaagctctatttgacggctgtggttttgatgaaacatgctgtgaaaCTCTGTCCTCTGCTCTACAATCATCAAACCATCTGACAGAGCTGAACCTGAGGACCAAtcatctgcaggattcaggagtgaagctgctttctgatggactgaagagttcaCACTGTCGTTTAAACATACTGAGGTTTGACAATCACACACGTTTGAAACTTAATATGTTCAAACATGTTAATAAATAGGTGTTTCATTGTTATAGGTAGCAGATATTTCAGTATGATtgtatcagtgttattttatctagtcaaaaaaacaaaaacagagaattTTGTAATACCGTTTTCCACTTATGAGCTTAAATAAGACCTCAAtgacttttaatagtttatttaaaaaatgttatgtgtaGGGACCCCAAGAAATATATATTCTGTGTTTAATACTATTCAAAAgtattaatgtatgtattttatttttttatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250704.1 lncRNA downstream 49794 23674126 ~ 23675958 (-) False LOC122343181
XR_006250703.1 lncRNA downstream 49884 23674126 ~ 23675868 (-) True LOC122343181
TU45886 lncRNA downstream 49957 23674145 ~ 23675795 (-) False LOC122343181
XR_006250712.1 lncRNA downstream 229001 23494326 ~ 23496751 (-) True LOC122343190
TU45850 lncRNA downstream 231863 23478525 ~ 23493889 (-) True G31017
XR_006250723.1 lncRNA upstream 117 23728035 ~ 23731996 (-) True LOC122343201
XR_006250716.1 lncRNA upstream 4835 23732753 ~ 23743520 (-) True LOC122343194
XR_006250706.1 lncRNA upstream 39359 23767277 ~ 23779966 (-) True LOC122343184
TU45902 lncRNA upstream 274948 24002866 ~ 24009615 (-) True G31062
TU45903 lncRNA upstream 275774 24003692 ~ 24010050 (-) True G31063
XM_043236117.1 mRNA downstream 290227 23416891 ~ 23435525 (-) True LOC122342328
XM_043237389.1 mRNA downstream 466433 23256365 ~ 23259319 (-) False LOC122343073
XM_043237390.1 mRNA downstream 466433 23256365 ~ 23259319 (-) True LOC122343073
XM_043236116.1 mRNA downstream 475138 23240075 ~ 23250614 (-) True LOC122342325
XM_043236115.1 mRNA downstream 488672 23230042 ~ 23237080 (-) True LOC122342324
XM_043237481.1 mRNA upstream 88931 23816849 ~ 23929534 (-) True LOC122343128
XM_043237483.1 mRNA upstream 88980 23816898 ~ 23929534 (-) False LOC122343128
XM_043237254.1 mRNA upstream 479737 24207655 ~ 24220008 (-) True LOC122342994
XM_043237510.1 mRNA upstream 537431 24265349 ~ 24266607 (-) True LOC122343156
XM_043236125.1 mRNA upstream 584924 24312842 ~ 24319112 (-) True LOC122342338
TU45855 other downstream 179383 23497129 ~ 23546369 (-) False G31017
TU45768 other downstream 288737 23434980 ~ 23437015 (-) False LOC122342328
TU45110 other downstream 1480592 22128454 ~ 22245160 (-) True G30450
TU45123 other downstream 1509282 22216035 ~ 22216470 (-) True G30457
TU45011 other downstream 1948946 21629617 ~ 21776806 (-) True G30396
TU45890 other upstream 17568 23745486 ~ 23771768 (-) True G31050
TU45934 other upstream 382306 24110224 ~ 24110673 (-) True G31091
TU46017 other upstream 576178 24304096 ~ 24497596 (-) True G31134
TU45989 other upstream 578583 24306501 ~ 24495178 (-) True G31120
TU46025 other upstream 596052 24323970 ~ 24327232 (-) False LOC122342340

Expression Profile