RNA id: XM_043237447.1


Basic Information

Item Value
RNA id XM_043237447.1
length 910
RNA type mRNA
GC content 0.41
exon number 1
gene id LOC122343110
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20391465 ~ 20392374 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCATGACAGTATTCAGAATGGAGAAAACCCTTTAAGTGTTCACACTGTAATAAGAGATTCAGTCGGTCAGCACATCTGAAAACACATGAGATGATCCACAATGGAAAAAACTTATAAATGTGCACAGTGTAATAAACAATTCAGTGATTTAGGGGTTCTTAAAAGCCATGAGAAAACCCACACTGGAGTTAAACCttacaagtgttcacactgtgacaagagaTTCAGTCGGTCAGCACATCTGAGAATACATGAGATaatccacactggagaaaaaccttACAAGTGTTCACTCTGTGACAAACAATTCAACCAGTCAGCACATCTGAAATCACATGAGTTGGtccacactggagaaaaaaattacaagtgttcacactgtgacaagagaTACAGAGAGTCAAGAGACCTGAAAACACATGAGAGCATTCACACTGGAGTGAAACCTTACAAAtgttcacactgtgacaagagattcagttggttaaaacatctgaaaacacatgagaggatccacactggagagaaacctttaTCGTGTTCACACTGCAGTAAGAGATTCAGTGATTCACGAGACCTAAAAAGacacgagaggatccacacTGGAGTGAAACCTTACAAGTGCTCACACTGTGACAAAAGATTCAGTCAGTCAGCACATCTGAAAATGCATGTgaggatccacactggagagaaaccttatTCATGTTCACACTGCAGTAAGAGATTCGGTTTTTCAGGAGACCTTCGAAGACATGAAAGGATCCACACTGGAGTGAAACCTTAAAAAGTGTTTAGAGTGAAACGAGAGAATCAGTCGTTCATCACGTctgaaaagacatttaaagGATTCACAGTGGAGAGAAACCTTATCACTGCACTGTATGCAGGAAGGGTATCAATCACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44355 lncRNA upstream 46411 20344364 ~ 20345054 (+) True LOC122342270
TU44291 lncRNA upstream 121353 20266836 ~ 20270112 (+) True G29883
XR_006250696.1 lncRNA upstream 201494 20187984 ~ 20189971 (+) True LOC122343176
TU44256 lncRNA upstream 233942 20001067 ~ 20157523 (+) True G29857
TU44250 lncRNA upstream 408571 19981924 ~ 19982894 (+) True G29854
XR_006250693.1 lncRNA downstream 45291 20437665 ~ 20438508 (+) True LOC122343173
XR_006250679.1 lncRNA downstream 48174 20440548 ~ 20443225 (+) True LOC122343162
XR_006250680.1 lncRNA downstream 48174 20440548 ~ 20443106 (+) False LOC122343162
XR_006250678.1 lncRNA downstream 48174 20440548 ~ 20443007 (+) False LOC122343162
XR_006250699.1 lncRNA downstream 66996 20459370 ~ 20462342 (+) True LOC122343178
XM_043237303.1 mRNA upstream 13359 20376410 ~ 20378106 (+) True LOC122343026
XM_043236067.1 mRNA upstream 44741 20344346 ~ 20346724 (+) False LOC122342270
XM_043236064.1 mRNA upstream 206967 20183653 ~ 20184498 (+) True LOC122342265
XM_043236062.1 mRNA upstream 345466 20043755 ~ 20045999 (+) True LOC122342262
XM_043237373.1 mRNA upstream 348012 20037933 ~ 20043453 (+) True LOC122343063
XM_043236068.1 mRNA downstream 50972 20443346 ~ 20446136 (+) True LOC122342274
XM_043236069.1 mRNA downstream 75852 20468226 ~ 20469061 (+) True LOC122342275
XM_043237472.1 mRNA downstream 78296 20470670 ~ 20476708 (+) False LOC122343122
XM_043237475.1 mRNA downstream 80462 20472836 ~ 20476708 (+) True LOC122343122
XM_043236074.1 mRNA downstream 113037 20505411 ~ 20515629 (+) True LOC122342276
TU44357 other upstream 22649 20367675 ~ 20368816 (+) True G29921
XR_006250910.1 other upstream 143236 20248111 ~ 20248229 (+) True LOC122343930
unassigned_transcript_379 other upstream 284338 20107054 ~ 20107127 (+) True trnam-cau_25
unassigned_transcript_377 other upstream 285110 20106282 ~ 20106355 (+) True trnam-cau_24
unassigned_transcript_374 other upstream 287014 20104376 ~ 20104451 (+) True trnam-cau_23
TU44410 other downstream 304298 20696672 ~ 20706846 (+) True G29961
TU44534 other downstream 726188 21118562 ~ 21142831 (+) True G30058
TU44553 other downstream 776875 21169249 ~ 21170595 (+) False LOC122342286
TU44625 other downstream 976269 21368643 ~ 21761178 (+) False LOC122342301
TU44637 other downstream 995819 21388193 ~ 21630120 (+) True G30119

Expression Profile