RNA id: XM_043237467.1


Basic Information

Item Value
RNA id XM_043237467.1
length 687
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC122343116
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20917550 ~ 20918689 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atggtgtttattaaaatggAGAGTGAAGATGTGAAGGTTGAAGAAACATTGAGAATCAAACGTGAAGATtctgaggaacaaacagaccTGACGACACTGAAAGAGGAAAGTCAAGAATTCAATAAAGAAGAAGATGACATTCATTCTGAAAAGACACGAAAAAGAGATCAAAAGACAGCAAACAGAAGATATTTCACCTGccatcagtgtggaaagagtttcaacaAAAAAGGAAAGCTTGAAGTCCACACAagaattcacactggagagaagcctttcacctgccaacagtgtggaaagagtttcattCAAAAAGTAAATCTTAAATACCACACaagagttcacactggagagaaacccttcacctgccaacagtgtgaaAAGAGTTTTACTAAACCAGGAAACCTTAAAGaccacatgagagttcacaccggagagaagcctttcaccTGCAAACAGTGTGGAAAGGGTTTTACTaaaaaaggaaaccttaaaGACCACACGAGAATACATTCGGGAGAGAAGCCTTACTCCTGCTCGCAATGCGGAAAAAGTTTTGCACATAAACAACACCTCGATGCCCACATaaggattcacaccggagagaaacctttcacctgccaacagtgtggaaagagtttcactgaaaaaggaaaccttaaGAAACACATGAAGATTCACACGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44456 lncRNA upstream 34642 20880449 ~ 20882908 (+) True G30003
TU44458 lncRNA upstream 132020 20785309 ~ 20785530 (+) True G30005
TU44383 lncRNA upstream 272015 20645257 ~ 20645535 (+) True G29947
TU44381 lncRNA upstream 286221 20630820 ~ 20631329 (+) True G29945
TU44363 lncRNA upstream 419682 20497097 ~ 20497868 (+) True G29927
XR_006250691.1 lncRNA downstream 52821 20971510 ~ 20972249 (+) True LOC122343171
TU44529 lncRNA downstream 198972 21117661 ~ 21118522 (+) True G30056
XR_006250684.1 lncRNA downstream 207396 21126085 ~ 21126420 (+) True LOC122343166
XR_006250727.1 lncRNA downstream 212465 21131154 ~ 21133602 (+) True LOC122343205
XR_006250681.1 lncRNA downstream 245067 21163756 ~ 21167242 (+) True LOC122343163
XM_043237448.1 mRNA upstream 10824 20902219 ~ 20906726 (+) True LOC122343111
XM_043237174.1 mRNA upstream 117009 20790175 ~ 20800541 (+) True LOC122342951
XM_043237203.1 mRNA upstream 239641 20655215 ~ 20677909 (+) True LOC122342964
XM_043237404.1 mRNA upstream 272758 20640142 ~ 20644792 (+) False LOC122343085
XM_043237403.1 mRNA upstream 272758 20641611 ~ 20644792 (+) True LOC122343085
XM_043236078.1 mRNA downstream 2746 20921435 ~ 20929163 (+) True LOC122342280
XM_043236079.1 mRNA downstream 99463 21018152 ~ 21020872 (+) True LOC122342283
XM_043237284.1 mRNA downstream 121091 21039780 ~ 21044018 (+) False LOC122343014
XM_043237283.1 mRNA downstream 121092 21039781 ~ 21044018 (+) True LOC122343014
XM_043237194.1 mRNA downstream 136803 21055492 ~ 21066850 (+) False LOC122342958
TU44410 other upstream 210704 20696672 ~ 20706846 (+) True G29961
TU44357 other upstream 548734 20367675 ~ 20368816 (+) True G29921
XR_006250910.1 other upstream 669321 20248111 ~ 20248229 (+) True LOC122343930
unassigned_transcript_379 other upstream 810423 20107054 ~ 20107127 (+) True trnam-cau_25
unassigned_transcript_377 other upstream 811195 20106282 ~ 20106355 (+) True trnam-cau_24
TU44534 other downstream 199873 21118562 ~ 21142831 (+) True G30058
TU44553 other downstream 250560 21169249 ~ 21170595 (+) False LOC122342286
TU44625 other downstream 449954 21368643 ~ 21761178 (+) False LOC122342301
TU44637 other downstream 469504 21388193 ~ 21630120 (+) True G30119
TU44630 other downstream 720851 21639540 ~ 21641756 (+) True G30115

Expression Profile