RNA id: XM_043237471.1


Basic Information

Item Value
RNA id XM_043237471.1
length 1934
RNA type mRNA
GC content 0.46
exon number 7
gene id rab21
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18547531 ~ 18554389 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACCTGACCCCTCTCCGGAACGTCACGGAACGGAACGCCATTAGATTGATGGCGGAGCTCCGTCGGGAGCCAGGCAGCGTTTAACAGGGGACTCGGCGCGAGGACTTCACGCGAAGGCGGCCGTTTGCGTTCGTCTGCGGATCTCTATGGCCGCTGTGATCGGCTAAGGGCCaggctttgtttgtttgtttgtttttgcgtCGGGCCGAGAGTTTGAGCATGGCGGCGGCCGGAGGGAAGACGTACTCGTTCAAGGTGGTGCTGCTCGGGGAGGGCTGCGTCGGCAAAACGTCGCTGGTGTTGCGATACTGCGAGAACAAATTCAACGACAAACACATCACCACTCTTCAGGCGTCGTTTCTCACGAAAAAGCTCAACATCACGGGAAAGCGAGTGAATCTGGCTATATGGGACACCGCCGGTCAGGAGCGTTTCCATGCCCTTGGACCCATCTACTACAGAGATTCCAACGGCGCGATACTGGTGTACGACGTCACAGACGAGGACTCGTTTCAGAAGGTGAAGAACTGGGTAAAAGAGTTAAGGAAAATGTTGGGGAATGAGATCTGTTTATGTATAGTAGgcaATAAAATTGACCTGGAAAAAGAGCGACATGTTTCGGTGGAGGAAGCAGAGGGatatgcCGAGTCGGTGGGTGCAAAACACTATCACACGTCAGCCAAATTAAACAAAGGCATCGAGGAGCTGTTTCTGGACCTGTGTAAACGCATGATGGAGACGGCTCAGGCGGAGGAGAGGTCGAGGGGGAACGGCGCGAGTCACACGAGCACAGCCCGGAGAGGCGTACAGATAGTCGACGACGAGCCCCAGACTGCCATGCCCGCCGGAGGCTGCTGTACATCCGGCTAAACACACTTACCCCCCTTTTTACCCCCCTCCCGGGACTGATAACGGCCTCTCTCGCCCTCCTCTGTGTAAAAACTGCCACTTCCCACAGCTACACTCACCTGCGACCGCTCTACAGCTCTGTTAAGTCATTTCTTTAACGGTTTGTCCCTTATTGGAAGGGTTGATTTGTAACTCCACCCTTCGACCGGCGGACTCTAGGGGCCAAAAGATGCCAGATCGACCTGTGTTGAGAACATTCGCAAATTCCTACAAATAGGTACCAAACAATAACGCCCGGtcttctaaaacacacacatgcactgatTAATTTCCCTAACAATCTGATACCTtagcactttttcttttttttttttttgttgtttctttcgGCAAGGCGTTGTGCATGTAGAATCTTTAAAATCCTAGTTTTATTTTacgtctgaaaaaaaaaaagagaaattctttattatttaataacttatttACAATTTCATCAAGCGTCTACGTGTCCAAAGACCTTCGTAATTCTTGTAATCAACAGGCTTGTCGTTCTTCTACGGTCTCGTTCTTCTGTCGTTCATATCTTCTGTATCTttcttaaaaatgcaacattaaaatCCATCTAGAACATTTAAACTCTTTGTAGgttttgtcttttctcttcAGCTTGCCAATTTAACGCTATCCGGATTTCgaaatggtaaaataaataaattgtgttgtTCGCAtgctacatttttgttttttttatatatagggAAAACATGCGATACTGTGTGCTTTACTTTTCAAGCTATCGATTGCAACGGCGAGTCGGAAAAGTGtacaatattcaatattaatgtTGTATGAATGTATAACGAATAATAATGGCTGTGGTAAAtgcttttttgggatttgtgtggttttttttaactgtaacttTTACGATGTTAATTGTCCCCCCACCGCACCTCCCCGAGACCCGAACGATGGGacaatttttgaaaatactaataatttcgACAACCGCATCACCTGTAAACACTGAGGTGCAGCTGTGAGCCTTCTGtgcctttaaataaaagtgtctaGATTGACCCACC

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07890 RAB21; Ras-related protein Rab-21

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43761 lncRNA upstream 81694 18441631 ~ 18465837 (+) True G29548
TU43755 lncRNA upstream 86936 18435643 ~ 18460595 (+) True G29544
TU43674 lncRNA upstream 486615 18059335 ~ 18060916 (+) True G29484
TU43659 lncRNA upstream 545052 17999597 ~ 18002479 (+) True G29476
TU43661 lncRNA upstream 546291 17999597 ~ 18001240 (+) False G29476
XR_006250718.1 lncRNA downstream 37058 18591447 ~ 18594116 (+) True LOC122343196
TU43831 lncRNA downstream 46039 18600428 ~ 18603316 (+) True G29591
TU43851 lncRNA downstream 108471 18662860 ~ 18665083 (+) True G29600
TU43888 lncRNA downstream 230656 18785045 ~ 18785246 (+) True G29627
TU43902 lncRNA downstream 260494 18814883 ~ 18815278 (+) True G29633
XM_043237485.1 mRNA upstream 325211 18218716 ~ 18222320 (+) True LOC122343129
XM_043237484.1 mRNA upstream 326274 18218716 ~ 18221257 (+) False LOC122343129
XM_043237386.1 mRNA upstream 336638 18202735 ~ 18210893 (+) True lman2la
XM_043237237.1 mRNA upstream 549873 17984993 ~ 17997658 (+) True ddx54
XM_043237201.1 mRNA upstream 584012 17939684 ~ 17963519 (+) True abl1
XM_043237231.1 mRNA downstream 2180 18556569 ~ 18565366 (+) True trim24
XM_043237233.1 mRNA downstream 2180 18556569 ~ 18565366 (+) False trim24
XM_043237232.1 mRNA downstream 2182 18556571 ~ 18565366 (+) False trim24
XM_043237271.1 mRNA downstream 65162 18619551 ~ 18622911 (+) False LOC122343002
XM_043237268.1 mRNA downstream 65553 18619942 ~ 18627271 (+) False LOC122343002
TU43756 other upstream 86214 18436460 ~ 18461317 (+) True G29545
TU43729 other upstream 246342 18300415 ~ 18301189 (+) True G29526
TU42966 other upstream 2073150 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 2561805 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 2705676 15841372 ~ 15841855 (+) True G28891
TU43926 other downstream 328790 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 735831 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 1176873 19731262 ~ 19786128 (+) False G29835
TU44230 other downstream 1191352 19745741 ~ 19747442 (+) False LOC122343071
TU44267 other downstream 1483549 20037938 ~ 20040195 (+) False LOC122343063

Expression Profile