RNA id: XM_043237475.1



Basic Information


Item Value
RNA id XM_043237475.1
length 1221
RNA type mRNA
GC content 0.39
exon number 3
gene id LOC122343122
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20470670 ~ 20476708 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CCGCTTCAATGACTTGAGGGAAATTAGCCGGGATGAATTAATCTGACACCTTGCCGTTTTTTCTTCCTTGGAGGACTAGGCACCCTGTctcatgtattttaatatttgttatttaatataaaaagaatatctCACCTTCATGAGCTTTATGCAATCTTAAGCCCATATCATTTTTAGACTGTGACACCTGTAAAattgttactgtttttaatttaagaatattttcctaagaaataaaaattgtgtaaaatgtaattattattttttgtacagtgcAGTATTATCATCAAATCTCTTCAGACTGAACAATAGACTGTTTAACTGTTGTGATTGTTTGCCCTTTCCTTCTACAGTCAGTGGTGCAGATCCATCATGAATGAAACGCAAACATCTGGAGATGAAGATTTTATTCCACAATGCAGTGCTGATCATGGAGGAGAGTCCAGTATTACAGCAGGAATGAAAAAATatGCCTGTTTTCtaacactggatccaaacacagcaaacaatgATCTCCGTCTGTCTGAGGACAACCGAGAGGTGACATGTGTGTCTGATTCTCAGCCATACcgtgatcatccagacagatttgatgatGTGTGTCAGGTTTTGTgtagagagagtctgtgtggacgctgttactgggagactgagtggagTGGAGAAGTGTTggtatcagtgtcatataagagcATCAGCAGGAAGGGACGGGGTGAAGAGTGTTGGTTTGGAGGTactgatcagtcctggagtttgatctGCTCTCCTTTCAGAtactcattcagacacaatGACACATGGACCGAACTCTCAGTGAAGCCCATCATCATCAGAAAAGGAACTGGAGACTATGATAATGTCTATAaagtaggagtgtatgtggatgagagcgaaggaactctgtccttcttcagcaTCTCCAGAAACacaatgagactcatccacacagtccagaccacattcactcagacactctATCCTGGGTTTATGGCTTGGTTTGGATCATCTGTGAAattgtgttgatgaatcagaagagactgatgagATTCTACCCATAATTctttgagctgcatgatgaaTCAGTAACAGTGAGATGTTATGAGTCTCTTCAAGACATTAATACTGCAGCTCAACTTCTATCACTCAAATAACAGAATAAACATTTGtatcattataattaaaatgacctttccattgaaaagtttcttttacaaacatgaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006250699.1 lncRNA upstream 10494 20459370 ~ 20462342 (+) True LOC122343178
XR_006250698.1 lncRNA upstream 12642 20459370 ~ 20460194 (+) False LOC122343178
XR_006250679.1 lncRNA upstream 29611 20440548 ~ 20443225 (+) True LOC122343162
XR_006250680.1 lncRNA upstream 29730 20440548 ~ 20443106 (+) False LOC122343162
XR_006250678.1 lncRNA upstream 29829 20440548 ~ 20443007 (+) False LOC122343162
TU44363 lncRNA downstream 20389 20497097 ~ 20497868 (+) True G29927
TU44381 lncRNA downstream 154112 20630820 ~ 20631329 (+) True G29945
TU44383 lncRNA downstream 168549 20645257 ~ 20645535 (+) True G29947
TU44458 lncRNA downstream 308601 20785309 ~ 20785530 (+) True G30005
TU44456 lncRNA downstream 403741 20880449 ~ 20882908 (+) True G30003
XM_043236069.1 mRNA upstream 3775 20468226 ~ 20469061 (+) True LOC122342275
XM_043236068.1 mRNA upstream 26700 20443346 ~ 20446136 (+) True LOC122342274
XM_043237447.1 mRNA upstream 80462 20391465 ~ 20392374 (+) True LOC122343110
XM_043237303.1 mRNA upstream 94730 20376410 ~ 20378106 (+) True LOC122343026
XM_043236067.1 mRNA upstream 126112 20344346 ~ 20346724 (+) False LOC122342270
XM_043236074.1 mRNA downstream 28703 20505411 ~ 20515629 (+) True LOC122342276
XM_043237273.1 mRNA downstream 66424 20543132 ~ 20559014 (+) True LOC122343005
XM_043236075.1 mRNA downstream 157176 20633884 ~ 20638611 (+) True LOC122342277
XM_043237404.1 mRNA downstream 163434 20640142 ~ 20644792 (+) False LOC122343085
XM_043237403.1 mRNA downstream 164903 20641611 ~ 20644792 (+) True LOC122343085
TU44357 other upstream 104020 20367675 ~ 20368816 (+) True G29921
XR_006250910.1 other upstream 224607 20248111 ~ 20248229 (+) True LOC122343930
unassigned_transcript_379 other upstream 365709 20107054 ~ 20107127 (+) True trnam-cau_25
unassigned_transcript_377 other upstream 366481 20106282 ~ 20106355 (+) True trnam-cau_24
unassigned_transcript_374 other upstream 368385 20104376 ~ 20104451 (+) True trnam-cau_23
TU44410 other downstream 219964 20696672 ~ 20706846 (+) True G29961
TU44534 other downstream 641854 21118562 ~ 21142831 (+) True G30058
TU44553 other downstream 692541 21169249 ~ 21170595 (+) False LOC122342286
TU44625 other downstream 891935 21368643 ~ 21761178 (+) False LOC122342301
TU44637 other downstream 911485 21388193 ~ 21630120 (+) True G30119

Expression Profile