RNA id: XM_043237479.1


Basic Information

Item Value
RNA id XM_043237479.1
length 1815
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC122343126
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 22315908 ~ 22320097 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

attcacaacacagtataattaaaacatacaaactgAAGGTCAAAGATTCATTATTGAGCACACTGATCCAATAACAGAGTGTAACGCCatgccagcagagggagccgtCGCCCAAGTACTGACTCGTCTCCACTTCCTCTGCGCTCACTTCTTGTTTGCCCAGCATAAAGCCAGAGCACATGTTACACTTATTGCGAATTATTGCCAGTTtcactgccttaccaagcgtttctCCCATGTTTATTCTGACTGCCAGCTGAGGCCCGTGAAGCTGAGGTCCACATTAATGTAAAGCCTTTCTGCGCCCTCCTTGATACCGGCAGCGCGGTGAGTTTGGTATGACCCAACATCGTCGCTCCCAGGGTAGAAACAAAATCCTACATCCCCATTTCCTGTGTGCATGGAGAAACATGACAAGTGCCCACCTGGAGGGGTGAACATGTCTGCGGTTTCTGGTTCCTGGCCGATTGAAGGTCGGGATATTAAAGGATCTGCCAGTGCTGCTCAGAAGGCATTAGCCAGGGTTTGACCGCCTCCTGTCCACACACAACCTGCCAGCCCCAAAGGGAGACACGACAATGGAGGCCAGCTCGACGACCACAACAATGCCCAACTCTACTGGTGAAGTGAAGCTtctttctgatggactgaagagtccaaactcaAAGCTGGAGATTTTAAGATTTTCCATATGTAATCTCACTACACAGTCTTGTGagagtttgtcttcagttttacaatcctcaaactctgtcctgagagAACTGGACCTGAGTagcaatgacctgcaggattcaggagtgaagctgctttctgaaggactgaagagtttAAACTCCAAGCTGGAGACAATGAGgttgtctggctgcatggtgacagaggaaggctgtaattatttgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatcctggagattcaggagtgaagctgctctctgaaaaactggaggatccaaactgctcACTGAATAAACTCAACGTTGATCATGGAGGAGAATCCAGGATTACAACAGGACTGAAGAAATatgagtgttttctcacactggatccaaacacagcacacactaaaCTCAGACTGTCTGAGGACAACAGAAGAGTAACATTTGTGTTTGAGTCTCAGCCATAtccctgatcatccagacagatttaaAATGTCTCAGGTGTTGtgtggagagagtgtgtgtggacgctgttactgggagactgagtggagTGGGTTTGTGGATATATCGGtgtcatataagaacatcagcagaAGGAGAggtgatgagtgtgtgtttggacgtaatgatcagtcctggagtttgatctGCTCTCGCTACAGTTACTCATTCATACACAATAACAGAGAGACTAATTtctctgtgaagcccatcaTCATCAGCAGAAGACCAGAAGTGTATGGTAATGATAATATCTATAGAACAGGAGTGTATTTGGATGAGAGCGCAGGGATTCTGTCGttctacagcgtctctgacacaatgagactcatccacacagtccagaccacattcactcagacactctgtcctgggttttatcttttttttggatcatcagtgaaactatgttgatgaatcagaagagactgagCAGAGATTCTACCCATAATGCTTTGAGCATGATTGATGAAGAACATGTAATcaatttctgttatttttgtatagaaataaaaatactaaaaaaaataaagataaatcgACTTGATATCAGATTTTAATCAATGTTTGTATCATGAATATAACTGATTTTTGACAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45132 lncRNA downstream 34719 22280672 ~ 22281189 (-) True G30465
TU45059 lncRNA downstream 506290 21676876 ~ 21809618 (-) True G30423
TU45070 lncRNA downstream 543708 21769579 ~ 21772200 (-) False LOC122342302
TU45062 lncRNA downstream 639777 21673723 ~ 21676131 (-) True G30425
XR_006250701.1 lncRNA downstream 642484 21668810 ~ 21673424 (-) False LOC122343179
TU45173 lncRNA upstream 39120 22359217 ~ 22421953 (-) True G30499
XR_006250717.1 lncRNA upstream 76421 22396518 ~ 22398023 (-) True LOC122343195
TU45181 lncRNA upstream 105495 22425592 ~ 22428757 (-) True G30506
TU45193 lncRNA upstream 166678 22486775 ~ 22487119 (-) True G30518
TU45195 lncRNA upstream 167323 22487420 ~ 22488169 (-) True G30520
XM_043237393.1 mRNA downstream 76901 22235757 ~ 22239007 (-) True LOC122343076
XM_043237439.1 mRNA downstream 437116 21870416 ~ 21878792 (-) True LOC122343106
XM_043237440.1 mRNA downstream 437136 21870415 ~ 21878772 (-) False LOC122343106
XM_043236101.1 mRNA downstream 455624 21847120 ~ 21860284 (-) True LOC122342306
XM_043236099.1 mRNA downstream 535289 21775098 ~ 21780619 (-) True LOC122342303
XM_043237170.1 mRNA upstream 5413 22325510 ~ 22334793 (-) True LOC122342947
XM_043237171.1 mRNA upstream 65766 22385863 ~ 22395600 (-) True LOC122342948
XM_043237275.1 mRNA upstream 108977 22429074 ~ 22431623 (-) True LOC122343006
XM_043237366.1 mRNA upstream 175189 22495286 ~ 22499529 (-) True LOC122343060
XM_043236105.1 mRNA upstream 248127 22568224 ~ 22577494 (-) True LOC122342313
TU45110 other downstream 70748 22128454 ~ 22245160 (-) True G30450
TU45123 other downstream 99438 22216035 ~ 22216470 (-) True G30457
TU45011 other downstream 539102 21629617 ~ 21776806 (-) True G30396
TU44977 other downstream 575578 21737091 ~ 21740330 (-) True G30372
TU45006 other downstream 929471 21383469 ~ 21386437 (-) True G30395
TU45768 other upstream 1114883 23434980 ~ 23437015 (-) False LOC122342328
TU45855 other upstream 1177032 23497129 ~ 23546369 (-) False G31017
TU45890 other upstream 1425389 23745486 ~ 23771768 (-) True G31050
TU45934 other upstream 1790127 24110224 ~ 24110673 (-) True G31091
TU46017 other upstream 1983999 24304096 ~ 24497596 (-) True G31134

Expression Profile