RNA id: XM_043237481.1


Basic Information

Item Value
RNA id XM_043237481.1
length 1645
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC122343128
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 23816849 ~ 23929534 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

taaagaaatggaaatatccagcgatgaatataaagtgttgttcatctttgatggtttgGACGAGTGTCGTCTGTCTCTGGACTTTAAGAGTAAAGTGAAACTGTGTAATATATCTGAGTCAGCCTCAGTGgatgtgctgctgatgaacctgattgtggggaatctgcttccctctgctctcatctggatcacctccagaccagcagcagctgatctcGTCCCCTCTGAGTGCGTCCATCGAGTGACAGAGGTACGAGGCTTCAATGAGCCACAGAAGGAGGAATACTTCAGGAAGAGGATCAGTGATCAGAGTGTGGTCGACAGGATCATCTCACACCTGAAGTCCTCCAGGAGCCTCttcatcatgtgtcacatcccagtcttctgctggatctcagccactGTTCTTGAGAAGATCTTGAGTCGAGCAGAGACTGGAGAGATTCCTAAGActctcactcaaatgtacacacacttcctgatcctTCAGACCAACATCAAACGTGAGAAAGACTATGGGAAGATCTACGTGACAGATGAAGACATGATCCTCAAACTGGGGAAACTTGCTTTCCAGCAGCTTGTAAAGGAAACCTGATCTTCTATGATGAAGACCTTAGAGAGTGTGGCATTGATGAGATAGAAGCATCAGTTTATTCAGGACtgtgcactcagatcttcagagaggagcTGGGATTGTTTCTGGGAAAGTTTTCTGCTTCGTTCACCTGAGCCTTCAGGAACATCTAGCAGCTCTATATGTTCATCTCTCTTTTACAAACAGGAAGAGAAATGTTTTCAACCAAACCAAACACAGACTATTGTCCAAgatattttaccaaaataaatataattcattatctGAGCTGCATCAGGGAGCTGTGAATGAGGTTCTAAAGAGTAAGAATGGACATTTGGATCTTTTCCTGAGGTTTCTTCTGGGTCTCTCAGTGGAGTCCAATCAGACTCTCTTAAGAAAACTACTgacacagacaggaagctgctcctacaacaaagagaaaacagttCAGTTCATCAAAGAGAAGATCAGGAAGAATCAGAGAGATTCAAAtaaatccatcaatctgtttaactgtctgaatgaactgggtgatgattcactgatgcaGGAGATTCAGGGTTATCTGAAATCTGGAGGAATAAGAGAAACCAAACTCTCCTCTTCACAGTGGTCAGCTCTGGTTTATGTGTTGCTGACATCAGAGCAGAAGATGGATGTTTTGATCTACAACAGTTTATTGGAGAACAACATACAGGAGATGAAGTTCTTCAGTATCTGTTACCTGTGGTTAAAGAATCCAGATCAGTTTGGCTATGTGGATGCAAACTCACTGCTCAGTCTGTTGacgtttgtcttcagttttacaatcctcaaactcaaacatcctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagctgctctctgaaggactgaagagtccaaactgtcatctggagattctgagGCTATGTGGATGCAATCTCACTGCTCAGTcttgtgaaagtttgtcttcagttttacaatcctcaaactcaaacatcctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagctgctctctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250706.1 lncRNA downstream 36883 23767277 ~ 23779966 (-) True LOC122343184
XR_006250716.1 lncRNA downstream 73329 23732753 ~ 23743520 (-) True LOC122343194
XR_006250723.1 lncRNA downstream 84853 23728035 ~ 23731996 (-) True LOC122343201
XR_006250704.1 lncRNA downstream 140891 23674126 ~ 23675958 (-) False LOC122343181
XR_006250703.1 lncRNA downstream 140981 23674126 ~ 23675868 (-) True LOC122343181
TU45902 lncRNA upstream 73332 24002866 ~ 24009615 (-) True G31062
TU45903 lncRNA upstream 74158 24003692 ~ 24010050 (-) True G31063
XR_006250709.1 lncRNA upstream 75439 24004973 ~ 24006236 (-) True LOC122343187
TU45904 lncRNA upstream 76710 24006244 ~ 24007202 (-) True G31064
TU45912 lncRNA upstream 106815 24036349 ~ 24036751 (-) True G31072
XM_043237441.1 mRNA downstream 88931 23725752 ~ 23727918 (-) True LOC122343107
XM_043236117.1 mRNA downstream 381324 23416891 ~ 23435525 (-) True LOC122342328
XM_043237389.1 mRNA downstream 557530 23256365 ~ 23259319 (-) False LOC122343073
XM_043237390.1 mRNA downstream 557530 23256365 ~ 23259319 (-) True LOC122343073
XM_043236116.1 mRNA downstream 566235 23240075 ~ 23250614 (-) True LOC122342325
XM_043237254.1 mRNA upstream 278121 24207655 ~ 24220008 (-) True LOC122342994
XM_043237510.1 mRNA upstream 335815 24265349 ~ 24266607 (-) True LOC122343156
XM_043236125.1 mRNA upstream 383308 24312842 ~ 24319112 (-) True LOC122342338
XM_043236128.1 mRNA upstream 395854 24325388 ~ 24327263 (-) True LOC122342340
XM_043237349.1 mRNA upstream 547462 24476996 ~ 24479914 (-) True ckap4
TU45890 other downstream 45081 23745486 ~ 23771768 (-) True G31050
TU45855 other downstream 270480 23497129 ~ 23546369 (-) False G31017
TU45768 other downstream 379834 23434980 ~ 23437015 (-) False LOC122342328
TU45110 other downstream 1571689 22128454 ~ 22245160 (-) True G30450
TU45123 other downstream 1600379 22216035 ~ 22216470 (-) True G30457
TU45934 other upstream 180690 24110224 ~ 24110673 (-) True G31091
TU46017 other upstream 374562 24304096 ~ 24497596 (-) True G31134
TU45989 other upstream 376967 24306501 ~ 24495178 (-) True G31120
TU46025 other upstream 394436 24323970 ~ 24327232 (-) False LOC122342340
TU46026 other upstream 396250 24325784 ~ 24327232 (-) False LOC122342340

Expression Profile