RNA id: XM_043237484.1


Basic Information

Item Value
RNA id XM_043237484.1
length 822
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC122343129
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18218716 ~ 18222320 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTGTGAAATATCCTACTTAGCATCGTAATTAAACGACTATATGAGAactaattaatttgtttgtttatgaatgGGTTTTATTAAATGCGGACAATTTcgcatattttaatgtattttaatgtaacacATGCGCTATTGAAGCGTTATTATTCCCCTGACGTCACCCAGATGACGTCATCCGCGCGTTCTAAGAGACAGCGGGAGCGCGCACAGAGGAATGGGCCTGCTGTCAGTCTTAAGAAGGCTGAAGAACTCTCCTGAGCAGGAGGTTCGAATCCTGCTGTTGGGTTTAGACAATGCAGGTAAAACCTGTATCCTGAAGCAGCTGGCGTCAGAGGACATCAGCCACATCACTCCCACACAGGGCTTCAACATCAAGAGCGTCCAGTCTCAGGGCTTCAAGCTCAACGTCTGGGACATCGGCGGACAGCGCAAGATCAGACCGTACTGGAGGAACTACTTCGAGAACACAGATCTCCTGATTTATGTGATTGACAGCTCAGACAGAAAACGCTTTGATGAAACCGCGCAGGAACTGGCGGAGCTGCTTGATGAGGAGAAGCTGAACATGGTGCCGCTGCTAATCTTTGCCAACAAACAGGACTTGATGACGGCGGCGACTGCAGCGGAGATCGCCGAGAGTCTGAACCTGCACACGATACGAGACCGGATCTGGCAGATCCAGCCCTGCTCCGCTCTCACTGCAGAGGGAgtgcaggtacacacacacacacacacagagactcacacacacaaatatatacatacatagacacacacacacacacagagactcacacacacaaatatatacatacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43674 lncRNA upstream 157800 18059335 ~ 18060916 (+) True G29484
TU43659 lncRNA upstream 216237 17999597 ~ 18002479 (+) True G29476
TU43661 lncRNA upstream 217476 17999597 ~ 18001240 (+) False G29476
TU43518 lncRNA upstream 286312 17931884 ~ 17932404 (+) True G29364
TU43430 lncRNA upstream 295827 17920709 ~ 17922889 (+) False G29318
TU43755 lncRNA downstream 214386 18435643 ~ 18460595 (+) True G29544
TU43761 lncRNA downstream 220374 18441631 ~ 18465837 (+) True G29548
XR_006250718.1 lncRNA downstream 370190 18591447 ~ 18594116 (+) True LOC122343196
TU43831 lncRNA downstream 379171 18600428 ~ 18603316 (+) True G29591
TU43851 lncRNA downstream 441603 18662860 ~ 18665083 (+) True G29600
XM_043237386.1 mRNA upstream 7823 18202735 ~ 18210893 (+) True lman2la
XM_043237237.1 mRNA upstream 221058 17984993 ~ 17997658 (+) True ddx54
XM_043237201.1 mRNA upstream 255197 17939684 ~ 17963519 (+) True abl1
XM_043237202.1 mRNA upstream 255197 17947838 ~ 17963519 (+) False abl1
XM_043237407.1 mRNA upstream 280800 17933368 ~ 17937916 (+) False exosc2
XM_043237471.1 mRNA downstream 326274 18547531 ~ 18554389 (+) True rab21
XM_043237231.1 mRNA downstream 335312 18556569 ~ 18565366 (+) True trim24
XM_043237233.1 mRNA downstream 335312 18556569 ~ 18565366 (+) False trim24
XM_043237232.1 mRNA downstream 335314 18556571 ~ 18565366 (+) False trim24
XM_043237271.1 mRNA downstream 398294 18619551 ~ 18622911 (+) False LOC122343002
TU42966 other upstream 1744335 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 2232990 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 2376861 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 2563535 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 2663034 15439334 ~ 15555682 (+) True G28806
TU43729 other downstream 79158 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 215203 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 661922 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 1068963 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 1510005 19731262 ~ 19786128 (+) False G29835

Expression Profile