RNA id: XR_006250672.1



Basic Information


Item Value
RNA id XR_006250672.1
length 981
RNA type transcript
GC content 0.45
exon number 2
gene id LOC122343130
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18916326 ~ 18917533 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GTGATCAAACGCACTGAAAACCCCCTCAAGGCCCACTATTATAAATATGGCGTTTGTTAAAGAGGAGAGCGAAGAAGCGTTCAGAGTCAAACGTGAAGATACAGAGGAACAAATAAAGATTGTGTTCATTAAAGAGGAGAGCGAAGAAGTGAAGATGGAAGAAACATTCAGAGGCAAACGCGAAGAAGCCgaggaacaaacagAGCTCAGAAGACTGCAAGTGCTTTCGTCTGCCAacagtgcggaaagagttttGGAAAAACGGAAACCTTAAAGTCCACATgaggattcacaccggagagaagccgtacGCCTGTAAACAATGCGCCAAGAGTTTCACGCGAACCGACAGCCTTAAGAGTCACCTGAGGACTCACgccggagagaaaccgttcgCCTGTGGTCAATGCGGAAAGCGTTTCCCACACAAAGCCACGTTTCACAATCACGTGAGAATTCACACCAGAGAGAAGCCTTACACCTGCCAACTGTGCGGAAAAACGGTGAACCGACAAGGGAAGCTCAAGAttcacatgagagttcacaccggGAGAAACCCTTCGCCTGCGATCGCTGTGGAAAACGCTTCCCGTACAAAGAAAGCTTTAATAAGCATATGAAGATCCACTTAAGAGAGAGCTGTTTTGTATGCCACCAGTGTGGGATGAGTTTTGCAGGCAGGACTAAACTTAAGAGGCACGTAACGACTCACGTTGGACGGGAGCCTTTTATGTGTCACGAATGTGGAAATGTGGAGTTTCATGAAAAAAGCAAACCTCAGGACTCACATGAGAGCTCACACTTGAGGGAAGATTGTTTTACCCGCCATAAATGTAGAAAGCGTTTCAGACATAAATAAGTTTCTACCAATGGTGTGTTGGCGGTCTTCCATAACAAGGAGGTGAATTTACTTCAAATTCTTATAgtctgttttatatttctgtgttaaaatgtatttattaaagcgAAGTATGAATCTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006250724.1 lncRNA downstream 55156 18857887 ~ 18861170 (-) True LOC122343202
TU44114 lncRNA downstream 58605 18857474 ~ 18857721 (-) True G29753
TU44101 lncRNA downstream 109658 18800904 ~ 18806668 (-) True G29741
TU44098 lncRNA downstream 129634 18786196 ~ 18786692 (-) True G29738
TU44096 lncRNA downstream 132411 18783605 ~ 18783915 (-) True G29736
XR_006250707.1 lncRNA upstream 38685 18956218 ~ 18958048 (-) True LOC122343185
TU44168 lncRNA upstream 49243 18966776 ~ 18967064 (-) True G29796
TU44183 lncRNA upstream 128284 19045817 ~ 19053531 (-) True G29806
XR_006250721.1 lncRNA upstream 308441 19225974 ~ 19226499 (-) True LOC122343199
XR_006250705.1 lncRNA upstream 415389 19332922 ~ 19333726 (-) True LOC122343183
XM_043237400.1 mRNA downstream 13774 18898807 ~ 18902552 (-) False LOC122343082
XM_043237399.1 mRNA downstream 13828 18898807 ~ 18902498 (-) True LOC122343082
XM_043237215.1 mRNA downstream 63700 18843947 ~ 18852626 (-) True LOC122342975
XM_043237235.1 mRNA downstream 75610 18836618 ~ 18840716 (-) True LOC122342979
XM_043237167.1 mRNA downstream 180729 18693002 ~ 18735597 (-) False LOC122342944
XM_043237328.1 mRNA upstream 5730 18923263 ~ 18927380 (-) True LOC122343034
XM_043236047.1 mRNA upstream 49728 18967261 ~ 18970537 (-) True LOC122342237
XM_043237435.1 mRNA upstream 97552 19015085 ~ 19017227 (-) True LOC122343103
XM_043236053.1 mRNA upstream 416196 19333729 ~ 19337492 (-) True LOC122342243
XM_043236056.1 mRNA upstream 553900 19471433 ~ 19474667 (-) True LOC122342247
TU44133 other downstream 13778 18900565 ~ 18902548 (-) False LOC122343082
TU44045 other downstream 180686 18724825 ~ 18735640 (-) False LOC122342944
XR_006250671.1 other downstream 254673 18656980 ~ 18661653 (-) True LOC122343054
XR_006250670.1 other downstream 254677 18656980 ~ 18661649 (-) False LOC122343054
TU43941 other downstream 487983 18408560 ~ 18428343 (-) True G29653
TU44159 other upstream 14003 18931536 ~ 18931875 (-) True G29787
unassigned_transcript_306 other upstream 1143056 20060589 ~ 20060671 (-) True trnal-aag
unassigned_transcript_307 other upstream 1143819 20061352 ~ 20061432 (-) True trnal-cag
unassigned_transcript_308 other upstream 1144942 20062475 ~ 20062557 (-) True trnal-aag_1
unassigned_transcript_310 other upstream 1145723 20063256 ~ 20063338 (-) True trnal-cag_1

Expression Profile