RNA id: XM_043237504.1


Basic Information

Item Value
RNA id XM_043237504.1
length 5709
RNA type mRNA
GC content 0.40
exon number 16
gene id LOC122343148
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 22840016 ~ 22856132 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttcctcagtgtttaataaatgttctgtAACTTATTAGTTGGTATGTAATACAGCATGTGATGTATGCCATGCCTgatcttatttgtttttgttaataaacattttctaaaatagtttttcattatttcttactatttgattgttttgtgcAAGAAGAGAGCTGCCTTAGATGTTTCACATACGAATGAGAAGTACAAATTATAACAtgctttgaatttgaattgCTTTGAATAAACAATTCTTGTCTTTTATTTACACGTATAAacttataatacaaaaatataaaacaatgcgCAGATATCACTTTGCTTAATTTACAAAGAACTTAAATTATGAACAAAAGTAATATACAGGTCAACATTACATTCATTCccatttttttccagaaataaaaGGTAACGACTTAATTGTGAAAATGATTACTACAGGTCTACAATGTTAGAAAATATAACACAGCAGGACATGCATAcaaaatacttcagaaatcatatttgtGGATCAAGTTTGCCTAAAACATTTGTGGACATATCTAGCATGATAACACTACAATAATAATCATGTCGtcttttacttgtatttttaagtaCCTTATCTACTTCTTTACTTATTATTGTGGATTGGTTTAAGTGAGTTTTAAATGGTTTCTGTTGTAATGTGGTGctatagagaaaataaaatgaacttgaCCTTTCAGTGCAGAGTAACACGGCGTTCTTTTCcttgaatgaatcagcatttGAAAGAATCGAGTGACTCGGTGATTCAACCGTCCAATCAGATGCGTCCCACTTCCTGCATCCCAATGTGTATACCCTCCATAAATAGCattcaaaactataaaactataaactatacTATCACATCAAATTTATGATGGCTAGGAGGCACATTGGGATGCAGGTACTGGGATGCCAGTTTTTCCATCATGGTGAGCTGGTCTATGTTCACATTGTACCTTGAACGCCTCAGTCAAGAACGCTCCTTATAGATCCGCCATCCTTGCACTGTAATATGTTCAGGCCGCTGCAGGAGttttgagatgttttatatttactgcATCATCCACCTTGGCCGCTTGCTGTCCCAGTACCTGAAAGGCTCTCGAGACGTCTATGTTCTGAAATCTTCAGTCCAGGAGGCCATCCAGATGAGGATCAAGTAGCTAATTTGATAAACTGAAACAGTTTGCACAGATAGACAACTTAAGGCTTGGATCTGTTATTCTGTTCGGTTCTCCCAGACTTATAGTACTTAGCTGCGTCCTGAATCTTGACCAGAATACCTCTCTTCTCCAGCTGGTCTCCACCTCTCCTGTCCCTCTCTTCCTCACAAATGATACTTACTTAATCCAGCTGGGGCGTCAAGATCATCATGTAACCAAGTAgtcacaaggtttttttttttttttttcttgaatgcGATCTCTACCAATTATACAGGCCACAATTTGTGTTAAACGTAaaatttggttgtttttaatGACCCAGAAGATGTGGCAGCACCGTCGTCGTTTAGATACGATGTTGCCACAAAGTGCTAGGTGTAGCAGAAATTATACAAACTAGAGATGCACGATATTGGATTTTTGCAGATATGCAGATATTCCGAAAACTCATTTTGGCCAATAccgatatatttatttttatttggaaacaacACCAAGTCCCTCCTGTGCAGAtagtaaaagctatttttttttctaacaagaACTTATTCATTGGAACTACACATGCTTTTACCGTTTACTCTCTCATCAACCGAACACGTCATTCTGTACTGTGCTTAAATGCAGCAATCCAAAGCAGGTTCTTTTACAGTGTGATGACCCCCAAATGCAGGGACAGCCAGCACATGCTACTGGAAGCAACCAGGAAGGTCATTCTTCAGCTGCCAGACTACACTATTCAGACTCCCCATTACAAAAAACATGACAAGTCAAGACAAGCACTGACAATGTGCAGGTCCTTACACTAAATTCTACTTGTTCTTACCTGTCACTACAGCAGCTCCATCTGTTCCTAATCCATACAACTTTTGAATTGGTATGTTTTTCTTACGCAGCACTTCCTTTATCGCAGCCACGGTAGTATTTGCCTTCCCGTTAGTGACGTTTACTAGCTCTAGAAATGGGCAGAAGAGCTGGCTTTCTCTGTGTAGCTTGGGGGGAAAAACTAAACATTCCCGCCTCAATCTCTTCTTCACTCCGCCAGAGTTTTGCAGCGTGTTTCAACGAATCCCTCTTAAGCAACACATCCTCTAATAGCTAGAAGTCAATGACAGAAGATGACGTCGGAGCAGAATCTGGATACAACGGAAGGTGAACATAAATGCTTAGAGgcaagagaaagacagagagaaaaacaagATCCAGTCCAGATGAGAAATGCCCCGACTACAGTCAGCGTTGATATATATTCTGAAACAGGTGCGAGTGTAAATGCTCCTTTATTGACCGGAAACACCTTTACAGGACCAGTAACCATTTATGGCTCAAATGCTGAAGGAAACGATAAACAGAAATCCTCAGAGATGGCAGAGGAACACAGAGAAATACAAGagctgcaaaactttttagaaactcacaaaacaaacatgaaggagaaaacagaatatatttttgaggGCAACAAAGACAAGGAAGCACAACTCAAGGCTGTTTACACAGatctgttcaacagaggAGATATGAAAGATGTCAATCACGAACATGAGATTCTGAAGATTGATGATGCTTTCAAGCGAAAAACACAGGACAAACCAATCAAatgcaatgatatatttactgaactaaggaaaaacagtgagaaaaaaaatgttctcacTAAGGGCatcgctggcattggaaaaactgtctctgtgcacaagttcatcctggactgggcagaaggaaaagccaatcaagatatacactgtgtgttcctgcttccattcagagagatTAACTTAATGACAAATGAAGATTTCAGTCTCCATGAGCTTCTGCTAGAATTTTATCCTGAACTGAAGGACCTGGAGAAATCAAAGATATATAAGGAATGTAAgatagcatttatatttgatggacttgatgagAGTCGCCTGTCtctaaattttaaaagtagatcACTGAACACTGTTGAGAAAAAAGCATCTGTGGATGTGCTCTATACAAGTCTGGTCAAAGGGACTCTGCTTCCATCAGCTATTGTCTGGGTGACATcacgaccagcagcagccaatcagattcctcCTCAGTATGTAGGTTTGTTCACAGAGGTCCGAGGATTCACTGACCAACAGAAGGAGGAGTACTTCAGAAAGAGATTCACAGATGAGAGTCTGTcctccagaatcatctcacacattaagacgtctcgtagtctctacatcatgtgccacattcctgtgttctgctggatcacagccacagtacttcaggatattctcactgagaacaatgaagagaacatcagcacaacactcactgaaatgtacattcacttcctgAGGATACAGATGAACATGAAGAGTCAGAAATATGGCGAACAACAAGAAGGAGAATGTTCAGAGCACttacttttaaatagaaagatGATTCTGAAGTTAGCCAAGCTAGCGTTTGAACAGCTGAAGcaggaaaacattgtgttctatGAGAAAGATCTGAAAGCATGTGGCATTGATGTGAGTAAAGATGCTGAGTTCACAGGAATGATCACTCAGATCTTTAAGAGGGAATTTGGACTTTATAAGACAAAGATCTTCTGCTTTGTGCATCTGAGCGTTCAAGAGTTCCTCGCTGCAGTGCATGTGTTCACCTGTTACCTGAACAAGAACCAGCAAGAGCTTAAGTTTTTCTTTGAGAATTCACAAACTACAGTCATGCAAAatcatacatttctttttagaaaCGTCAAATTGCATGACTTAACAGAGAGAGCCATTGAAAAAGCAATGCAGAGTAAGAGGCATCTGGACCTGTTCCTGCGGTTTCTGATGGGTATTTCACTGGAATCCAGTCAAAATCTGCTGAAaggcctgatcacacacactgaagacaCCACAGAGAGCATCAGAAATCTAAGTGCACACATTAAAGAATTACAACAACAGGACATCTCAGATGAAGCTTCAGTCAACCTGTTCTACTGCTTACTTGAGCTCAAGGATAATTCATTATATGAGGAAATCCAGAGTTACctcagttcaaatgaacatccaGGAAGAGATCTCTCATCTTCAATGTGCACAGTGTTGACCTACATACTACTGATGTCAGAGAAGGTGCTAGATGAGTTCAACCCAAAGAGGTTCACATCAGAACAATCAGATTACAAGAGACTCATTCCAGCtgtgagatgctgcagaaaagctctATTTGAAAGCTgtggttttgatgaaacatgctgtgaaaCTCTGTCTTCTGCTCTACAAACATCAAACCATCTGACAGAGCTGAACCTGAGCAGCAatcacctgcaggattcaggagtgaagctgctttctgatggactgaagagttcaCACTGTCGTTTAAACATACTGAGGCTGTGTGGGTGTCATCTCACTGCTCTGTCCTGTGAAAGTTTATCTTCAACTTTACAAtcatcaaactctgtcctgagagagatggacctgagtaacaatgatctgcaggattcaggagtgaagcttcttTTGGATGGAAGGAAGAGTCCAAACTCTAAGCTGGAGATACTGAGattttccaCATGTAATCTCACCGGGAGTTGTgggagtttgtcttcagttttacaatcctcaaactctgtcctgaaagagctgggcctgagtaacaatgatctgcaggattcTGGAGTGGAGCTtctttctgaaggactgaagagttcaAACTGTAGACTGAAGATACTGAGgttgtctggctgtatggtgacagaggaaggctgtggttatgtgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatcctggagattcaggagtgaagctgctctctgaaaaactggaggatccaaactgctcactaaataaactcaatgttgagcatggaggagaatccaggattacagcaggactCCAGAAATTGTTTTTCACACTGGATCCGAACACAGCATACACTGATCTCAgactgtctgaggagaacagaaaggtgacaggtgtgtctcagtctcagtcgtatcctgatcatccagacagatttgatgtgtgtcctcaggtgttgtgtagagagagtgtgtgtggacgctgttactgggagactgagtggagTGGACTTGTGtctatatcagtgtcatataagaacatcagcaggaagggaTGGGATGAAGATTGTTGGTTTGGatctaatgatcagtcctggagtttgatctGCTCTCCTGACAGATACTCATTCATACACAATAACATAATGACTGATCtctctgtgaagcccatcatcatcagaagaagaagaacaggagaTTATGAAGATATctacagagtaggagtgtatgtggatgagagcgcaggaactctgtccttcttcaatgtctctgacacaatgagactcatccacacagtccagaccacattcactcagacactctgtcCTGGGTTTAAAGTTTATTCtggatcatcagtgaaactgtgttgatgatgtaaggaggtgaatcaaaacctgtaaatgcaataagactgatctgagaagggatatccaaaggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45737 lncRNA downstream 50714 22787546 ~ 22789302 (-) True G30926
TU45728 lncRNA downstream 67162 22770855 ~ 22772854 (-) True G30920
TU45232 lncRNA downstream 269958 22569635 ~ 22570058 (-) True G30547
TU45204 lncRNA downstream 338842 22500162 ~ 22501174 (-) True G30525
TU45195 lncRNA downstream 351847 22487420 ~ 22488169 (-) True G30520
TU45749 lncRNA upstream 2127 22858259 ~ 22861620 (-) False G30938
TU45751 lncRNA upstream 2127 22858259 ~ 22861620 (-) True G30938
TU45790 lncRNA upstream 195616 23051748 ~ 23053620 (-) True G30967
TU45822 lncRNA upstream 407600 23263732 ~ 23264216 (-) True G30992
TU45823 lncRNA upstream 409626 23265758 ~ 23266130 (-) True G30993
XM_043237500.1 mRNA downstream 57762 22781662 ~ 22782254 (-) True LOC122343143
XM_043237282.1 mRNA downstream 70442 22759421 ~ 22769574 (-) True LOC122343013
XM_043237408.1 mRNA downstream 147306 22690338 ~ 22692710 (-) True LOC122343088
XM_043237357.1 mRNA downstream 158811 22676458 ~ 22681205 (-) True LOC122343051
XM_043236109.1 mRNA downstream 196236 22637421 ~ 22643780 (-) True LOC122342316
XM_043236113.1 mRNA upstream 340415 23196547 ~ 23197615 (-) True LOC122342322
XM_043236114.1 mRNA upstream 345338 23201470 ~ 23219173 (-) True LOC122342323
XM_043236115.1 mRNA upstream 373910 23230042 ~ 23237080 (-) True LOC122342324
XM_043236116.1 mRNA upstream 383943 23240075 ~ 23250614 (-) True LOC122342325
XM_043237389.1 mRNA upstream 400233 23256365 ~ 23259319 (-) False LOC122343073
TU45110 other downstream 594856 22128454 ~ 22245160 (-) True G30450
TU45123 other downstream 623546 22216035 ~ 22216470 (-) True G30457
TU45011 other downstream 1063210 21629617 ~ 21776806 (-) True G30396
TU44977 other downstream 1099686 21737091 ~ 21740330 (-) True G30372
TU45006 other downstream 1453579 21383469 ~ 21386437 (-) True G30395
TU45768 other upstream 578848 23434980 ~ 23437015 (-) False LOC122342328
TU45855 other upstream 640997 23497129 ~ 23546369 (-) False G31017
TU45890 other upstream 889354 23745486 ~ 23771768 (-) True G31050
TU45934 other upstream 1254092 24110224 ~ 24110673 (-) True G31091
TU46017 other upstream 1447964 24304096 ~ 24497596 (-) True G31134

Expression Profile