RNA id: XM_043237505.1


Basic Information

Item Value
RNA id XM_043237505.1
length 4649
RNA type mRNA
GC content 0.40
exon number 13
gene id LOC122343149
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20733274 ~ 20758659 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTACAAAGAATGTTAAAATGACCTGCAGTGACCGTTCCCTAAAGGCCCAACAATCCCGCTAACTTTTATGGTATGTCCTGTGAACATCTCCGTTGCGTCCTCCAGAAGTCCCGCGAACATGCTCGCGACATCTTCAGGACATCTAAGAAACCCTACACATGCAGGGGACGTTCGCAGATGCCATTCAGGGGACATTGGGGGGTCCTTTTTTGTAAGCTGGGGCATTCTGTAATGAGTCCGCTGAAGACAAGCGTTTAAGAACCAAGTGcaacttttattcaaagtgataATCCAAATACCCAAACAGACAAATACTTGACATGActttaaatacacacaacaACAGCAGATTACAACATTAATACAGAACAAGAGACTAGATCAACAATGTGGATTCTAAACCATGAGGGTCACAGGACGTGAACAAAACAATGAGAACATGCCACAATGTCTAGGACAACCAATCAACGTGGCACAATGAACAAGAGAACCAATGAGAACACGGCAAGAACAAGAGGGCAAGGGAGGCATGACATAAACAGGCATGATAACAGATCAGATTTACAAGATAAAGGGCATGAAAACATGAACCAATAAtgataaaattgaaataataattttcattcttCTAAATTCTAGTTGTTTGGTTCATAAGCTTTGGTATAATTTTCCTTCAATATTACCCTAGGTAAGAAATTTGTGTCATCCTTGATTTTGAGTTTTATAGATATGACAAGAGTAGACTTTAAATTAACTGGTGTGATTTTCTGATAAAGCAGATCTTTCTAAAGTTACAGGAGGATAGCGCTTCGAATAGTGGTTTTGCGGTTTTGTGGTTTTTTAATGTGTAACAAGTGAACCTTTTATTTTATGAGAATGAAAGAAAGTTTCAATGATTAGATTATCTTTCTTCTCATCTCTTCCTGGTAGAAGTGAAAGAAATTTTACAGCTGCTGTTCAACAACATTTCAGACGACGTAAAAGATAGATGTTCACAGACTGAAGGGAGTCAATGACAGAAGAGGATGTCGGAGAAGGATCTGGATACACTAGATGAGaatcaaaacagaaacacattttacagcTGCTGTTGCCTTTTCCGAGGTCTGAAGTTCAGAACATCTGATGAGCATGAATGCTTTGAGGCAGCAGAAAAACAAGTCCAGATGAGAAATGTCCAGACTACAGTTGGTGTAAATGCTAAAACAGGTGCGAGTGTAAATGCTCCTTTATTGACTGCGAACACCTTCACAGGACCAGTAACAATTTATGGCTCAATTGCTGAAGGAAACGATGAACAGAAATCTCCAGCAATGGTAAAggaacacagagaaaaaaaagAACAGCAGAACTCTTTCAaaactcacaaaacaaacatgctgaAGAAAGTGCAATATATTTTTGAGGGTGACCAAGAAAATGAAGCACACGTTAAGGCTGTTTACACAGAACTGTTCATCACAGAGGGAGATATGAAAGATGTTAATCACAAACATGAGATTCTGAAGATTGATGATGctttcaagaacaaaaaaacacagaataaaccaatcaaatgtaatgatatatttactaaactgaagaaaaacaatgagAAAAAGATTGTTCTGACTAAAggagtcgctggcattggaaaaactgtctctgtgcacaagttcatcctggactgggcagaaggaaaagccaatcaagatatacactgtgtgttcttgcttccattcagagagatTAACTTAATGACAAATGAAGATTTCAGTCTCCATGAGCTTCTTCTGGAATTTTATCCTGAAGTCAAGGATATGGAGAAATCAAAGCTATATACGAAATATAAGctagcatttatatttgatggacttgatgagAGTCGTCTGCCTCTAAATTTTAATAGTAGGTCTCTGAACACAGTTGAGAAAAAAGCATCTGTAGATGTGCTCTTTACAAGTCTGGTCAAAGGAACTCTGCTTCCATCAGCTCTTGTCTGGGTCACATCACGACCAggagcagccaatcagatccatCCTCAGTATGTGGGTTTGTTCACAGAGGTGCGTGGTTTCGGTGATCAACAGAAGGAGGAGTACTTCAGAAAAAGAATCAAAGATAAGAGTCTGTcctccagaatcatctcacacattaagacttctcgtagtctctacatcatgtgccacattcctgtgttctgctggatcacagccacagtacttcaggatattctcactgagaacaatgaagagaacatcagcacaacactaactgaaatgtacattcacttcctgCTGATACAGAGCCAGAAATACgataaaaaacaagaaagagaaTGTTCAGAGcacttacaattaaataaagagaTGATTTTGAAGTTAGCCAAATTAGCGTTTGAACAactgaaaaaggaaaacattgtgttctatAAGGAAGATCTGAAAGCATGTGATATTGATGCAAATAAAGACATGGAGCCCACAGGAATGATTGCTGAGATCTTCAGAAGGGAACATGGAATTCATGGAGCAAAGGTCTTCTGCTTTGTGCATCTGAGTGTTCAAGAGTTTCTtgctgcagtgcatgtgttCATCTGCTACCTGAACAAGAACATGAAGGagcttcagtttttctttgatgGGCCAGAAGAAAATTTGACATTAAAGAAATTACTGCAGAAAGCCATTAACAAAGCCATAGAGAGTCGGAGAGGACATCTGGACCTGTTCCTGCGGTTTCTGATGGGAATTTCACTGGAATTCAATCAACACCTGCTCAAAGGCCTGATCACACACCCTGAAGACACTACAGAGAGCATTCAAAAAATAActaagtacattaaaaaaaaacaaaataagtacaTCTCAGATGACATTCTAGTAAATCTATTCTACTGCTTACTTGAACTCAAGGATCATTCATTATATGAGGAAATCCAAAATTACCTCAGTTCAGGGAAACATCCAGGAAGAGATCTCTCATCTTCAATGTGCACAGTGCTGACCTACATACTGCTGATATCAGAGAAGGTGCTGGATGAGTTCAATCCAAAAAGGTTCACATCAAAAAAAGACTACAGGACACTGATTCCAGCtgtgagatgctgcagaaaAGCTTTATTTGATGGCTGTGGATTTGATGAAACATGCTGTGACACTGTGTCTTCTGctctacaatcatcaaactctCATCTGATAGAGCTAGACCTGAGCTGCAATCACCTGCAGGATTCcggagtgaagctgctttctgatggTCTGAAGAGTTCACACTGTCGACTGAACATACTGAGGTTGTGTGGCTGTAATCTCACTGCTCAGTCTTGTGAGAGTTTATCTTCAgctttacaatcctcaaactctgtcctgagagaactggacctgagtaacaatgatctgcaggattcaggagtgaagctgctctctgaaggactgaagagtccaaactctaAGCTGGAGATATTGAGATTTTCcacatgtaatctcactgcacagtCTTGTGGGAGTtggtcttcagttttacaatcatcaaactctgtcctgaaagaactggacctgagtaacaatgacctgcaggattcaggagtgaagcttctttctgaaggactgaagagtccaaactctaGCCTAGAAATACTGAGgttgtctggctgtatggtgacagaggaaggctgtcATTATGTatcttcagctctgacttcaaacccttcaaacctgagagagctggatctgagctacaatcatcctggagattcaggagtcaggctgctctctgaaaaactggaggatccaaactgctcACTGAACAAACTCAAAGTTGATCATGGAGGAGAAtccaggattacagcaggactGGTGAAATgGGTCTGTTTactcacactggatccaaacactgCAAACACTCATCTCCATCTGTCTGAGGATAACCGAAAGGTGACAGGTGTGGAAGAGAAACagtcgtatcctgatcatccagacagatttgattatTATCAGCAGGTGTTGTGtcaagagagtgtgtgtggacgctgttactgggagactgagtggagCGGACATGTGTTTATATCGGTGGcatataagaacatcagcaggaagggaGAGAGTAAAGATTGTGTGTTTGGAaataatgatcagtcctggagtttgttcTGCTCTCCCAGCAGTTTctcattcagacacaataaCATAGTGACTCATCTGTCTATGAAGCCCATCAGCATAACAGGAGTGTATGATGATAATGATATCTctagagtaggagtgtatgtggatgagagcgcaggaactctgtccttcttcagcgtctctgacacaatgagtctcatccacacagtccagaccacattcactcagacactctgtcctgggtttggtgtttattataaatcatcagtgaaactgtgttgatgaatcagaagagactgatgagattctacccagaatgctttgagctgcatgatgaatcagtaacagtgagatttacatttaaattcatgcaATAAGCTTTTATCAAGTTAGTTTGACATTTTATCAGGTCTTGCTTTCCCTGTGAAACAGAGCACAGATGTTAGTAGTATCTTCATGACATTAATACTGCATCtcaaatttataattataaaatactgtatataattaaCAGAATAAAGCGTGTCAGAAATACTGTAa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44858 lncRNA downstream 55410 20676260 ~ 20677864 (-) True G30286
TU44838 lncRNA downstream 82442 20650106 ~ 20650832 (-) True G30273
TU44837 lncRNA downstream 87739 20644964 ~ 20645535 (-) True G30272
TU44835 lncRNA downstream 100767 20632235 ~ 20632507 (-) True G30270
TU44827 lncRNA downstream 134573 20593319 ~ 20598701 (-) True G30262
TU44880 lncRNA upstream 100325 20858984 ~ 20861471 (-) False LOC122343123
TU44899 lncRNA upstream 213617 20972276 ~ 20974065 (-) True G30317
TU44912 lncRNA upstream 294319 21052978 ~ 21053654 (-) False LOC122343098
TU44875 lncRNA upstream 307255 21065914 ~ 21068188 (-) True G30301
TU44930 lncRNA upstream 359156 21117815 ~ 21126071 (-) True G30343
XM_043237288.1 mRNA downstream 190 20717982 ~ 20733084 (-) True LOC122343016
XM_043237287.1 mRNA downstream 193 20717982 ~ 20733081 (-) False LOC122343016
XM_043237187.1 mRNA downstream 17024 20692962 ~ 20716250 (-) False LOC122342956
XM_043237185.1 mRNA downstream 17024 20692963 ~ 20716250 (-) False LOC122342956
XM_043237182.1 mRNA downstream 17024 20692964 ~ 20716250 (-) False LOC122342956
XM_043237180.1 mRNA upstream 6135 20764794 ~ 20782505 (-) True LOC122342954
XM_043236076.1 mRNA upstream 45935 20804594 ~ 20814021 (-) True LOC122342278
XM_043236077.1 mRNA upstream 88862 20847521 ~ 20850533 (-) True LOC122342279
XM_043237476.1 mRNA upstream 99764 20858423 ~ 20864406 (-) True LOC122343123
XM_043237263.1 mRNA upstream 106902 20865561 ~ 20871694 (-) True LOC122342999
TU44338 other downstream 450874 20281106 ~ 20282400 (-) True G29906
TU44333 other downstream 494720 20237137 ~ 20238554 (-) True G29902
unassigned_transcript_385 other downstream 517035 20216160 ~ 20216239 (-) True trnal-aag_28
unassigned_transcript_384 other downstream 518942 20214249 ~ 20214332 (-) True trnal-aag_27
unassigned_transcript_383 other downstream 519952 20213241 ~ 20213322 (-) True trnal-cag_25
TU44972 other upstream 569057 21327716 ~ 21330093 (-) True LOC122343135
TU45006 other upstream 624810 21383469 ~ 21386437 (-) True G30395
TU45009 other upstream 624810 21383469 ~ 21385978 (-) False G30395
TU45011 other upstream 870958 21629617 ~ 21776806 (-) True G30396
TU44977 other upstream 978432 21737091 ~ 21740330 (-) True G30372

Expression Profile