RNA id: XM_043237507.1


Basic Information

Item Value
RNA id XM_043237507.1
length 3730
RNA type mRNA
GC content 0.41
exon number 13
gene id LOC122343152
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 23351927 ~ 23375871 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGATAGACTTGACACAGTAGATAAGATGGTGATGTGTTTTGGACCAGATGAAGCTGTGAAGGTCATGGTAGACGTCCTGAGAAAGATAAACCAAAATGATCTGGCTGAACAGTTGCAGAATGAACACAAGCaagCTCAGACTGAGGACAATATGAAGACATCTGTCCCTGTTAGAGagctgcaaaatgtcttgaaaactcacaaaaacaacatgaagatgaaggcaaaatacatttttgagggCAACAAAGAAACTGACACAGATCTGAAAGCTGTTTACACAGatctgttcatcacagaggGAGATATGAAAGATGTAAATCAGGAACATGAGATTCTGAAGATTGATGATGctttcaagaacaaaaaaacacaggacaaaccaatcaaatgcaatgatatatttactgaactAAGGAAAAACAATGAGTTAAAGATTGTGTTGACCAAAggagtcgctggcattggaaaaactgtgtctgtgcacaagttcatcctggactgggccGAAGGAGAATCTAATCAGGATATAGACTGTGTGTTCCTgcttccattcagagagatCAATGTGATTAAAAGAGAGATCAGTCTCCATGAGTTTCTGCTGAAATTTAATCCTGAATTGATGTACCTAGAGAAATCAAAGttatatacagaatataaacttgtgtttatatttgatggacttgatgagAGTCGACTGCCTTTGATTTTTGAAAGTGATGCATTGAACACTGTTGAGGAAAGATCATCTGTAGATGTGCTCTTTACAAGTCTGGTCAAAGGTAAACTGCTTCCATCAGCTCTTGTCTGGGTCACATcacgaccagcagcagccaatcagatccctccTCAGTATGTAGGATTGTTCACAGAAGTGCAAGGATTCACTGCTACAAAGGAGGAGTACTTCAGAAAGAAATTCACAGATGAGAGTCTGTcctccagaatcatctcacacattaagacgtctcgtagtctctacatcatgtgccacattcctgtgttctgctggatcacagccacagtacttcaggatattctcactgagaacaatgaagagaacatcagcacaacactcactgaaatgtacattcacttcctgAGGATACAGATGAACATGAAGTGTCAGAAATATGGCAAACAACAAGAAGGAGAATGTTCAGAGCACttacttttaaatagaaagatGATTCTGAAGTTAGCCAAGCTAGCGTTTGAACAGCTGAAGcaggaaaacattgtgttctatGAGAAAGATCTGAAAGCATGTGGTATTGATGTGAGTAAAGATGCTGAGTTCACAGGAATGATCGCTCAGATCTTTAAGAAGGAAGTTGGACTTTATAAGACAAAGGTCTTCTGCTTTGTGCATCTGAGCGTTCAAGAGTTCCTCGCTGCAGTGCATGTGTTCATCtgttacctgaaaaaaaacaagcaagagctgaagtttttctttgatgatTCACAAACTACAGTCATACAAAAGAGAGCCATTGAAAAAGCAATGCAGAGTAAGAGAGGGCATCTGGACCTGTTCCTGCGGTTTCTGATGGGAATTTCACTGGAATCCAGTCAAAATCTGCTCAAAGGcctgctcacacacactgaagacaCCACAGAGAGCATCAGAAATCTAAGTGCACATATTAAAGAATTACAACAACAGGACATCTCAGATGAAACTTCAGTCAACCTGTTCTACTGCTTACTTGAGCTCAAGGATAATTCATTATATGAGGAAATCCAGAGTTACctcagttcaaatgaacatccaGGAAGAGATCTCTCATCTTCAATGTGCACAGTGTTGACCTACATACTACTGATGTCAGAGAAGGTGCTAGATGAGTTCAACCCAAAGAGGTTCACATCAAAACTAGCAGACTACAAGAGACTCATTCCAGCtgtgagatgctgcagaaaagctctGCTGTGTGGGTGTCATCTCACTGCTCTGTCCTCTATAAGTTTATCTTCAACTTTACAAtcatcaaactctgtcctgaaagagctggacctgagtaacaatgatctgcaggattcaggagtgaagcgtCTTTCTGATGGACTCAATAGTCCAGTCTCTAAACTGGAGATACTAAGATTTTCcacatgtaatctcactgcacagtcttgtgggagtttgtcttcagttttacaatcctcaaactctgtcctgaaagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttcttttggatggactgaagagtccaaactctaAGCTGGAGATACTGAGattttccacatgtaatctcactgcacagtcttgtgggagtttgtcttcagttttacaatcctcaaactctgttctgaaagagctggacctgagtaacaatgatttgcaggattcaggagtgaagcttcttTCTGATGGACTCAATAGTCCAATTTCTAAACTGGAGATACTAAGATTTTCCACATGTAATATCACTGCACAGTCTTGTgggagtttgtcttcagttttacaatcctcaaactctgtcctgaaagagctggacctgagtaacaatgatctgcaggattcaggagtgaagcttctttctgaaggactgaagagtccaaactctaGACTGAAGATACTGAGGTTGTCTGGCTGcatggtgacagaggaaggctgtggttatgtgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatcctggagattcaggagtgaagctgctctctgaaaaactggaggatccaaactgctcactaaataaactcaatgttgagcatggaggagaatccaggattacagcaggactcaaaaaatgggtgtgttttttcacactggatccaaacacagcacacactcatCTCAGACTGTCTGAGGAGAATAGAGAGGTGACGTTtgtgtctcagtctcagtcgtatcctgatcatccagacagatttgatggtGTGTATcctcaggtgttgtgtagagagagtgtgtgtggacgctattactgggagactgagtggagTGGAGGTGTGGagatatcagtgtcatataagaacatcagcaggaagggacCGGGTGAAGAGTGTTTGTTTGGAtataatgatcagtcctggagtttgatctGCTCTCCTCACAGTTACTCCTTCATACACAATAAGATAAAGACTGATCtctctgtgaagcccatcaTCAGAAGAACAGGAGAGTATGGAGATATctacagagtaggagtgtatgtggatgagagcgcaggaactctgtccttcttcagcgtctctgactcaatgagactcatccacacagtccagaccacattcactcagacactctgtcctgggtttagtttttattattctggatcatcagtgaaactgtgttgatgaatcagaagtGACTGATGAGATTCTACCCAGAATGCTTTGAGCTGCTTGATGAATCAGTAACAGTGAGATGTTATGAGTCTCTTCAATACATTAATACTTCAGCTCAACTTCTATAGAAACAGGAAGataagaattaataattcatctaaaaaatagatataaaagaagaaatgtgtcagaaatagaaagatctgtgtcagtgtgtgtgtgtgtacttaaaaatattacatttggttttgatttgacttattgatatcattattattatttgttattattatgaaatactgaATTTGTTCCTAATAAAGACACTATCCTTATAAAa

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0006915 apoptotic process biological_process
GO:0048518 positive regulation of biological process biological_process
GO:0048522 positive regulation of cellular process biological_process
GO:0010941 regulation of cell death biological_process
GO:0010942 positive regulation of cell death biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:0043067 regulation of programmed cell death biological_process
GO:0043068 positive regulation of programmed cell death biological_process
GO:0008219 cell death biological_process
GO:0012501 programmed cell death biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45381 lncRNA upstream 69115 23274505 ~ 23282812 (+) True G30658
TU45377 lncRNA upstream 85625 23265866 ~ 23266302 (+) True G30654
TU45376 lncRNA upstream 87186 23264533 ~ 23264741 (+) True G30653
TU45375 lncRNA upstream 87461 23263597 ~ 23264466 (+) True G30652
TU45303 lncRNA upstream 102059 22807988 ~ 23249868 (+) True G30599
TU45401 lncRNA downstream 24185 23400056 ~ 23539037 (+) True G30674
TU45405 lncRNA downstream 40811 23416682 ~ 23419509 (+) False G30676
TU45406 lncRNA downstream 40811 23416682 ~ 23419509 (+) True G30676
TU45425 lncRNA downstream 80404 23456275 ~ 23761495 (+) True G30688
TU45475 lncRNA downstream 345190 23721061 ~ 23787562 (+) True G30732
XM_043237488.1 mRNA upstream 122195 23226211 ~ 23229732 (+) True LOC122343131
XM_043237277.1 mRNA upstream 168381 23168155 ~ 23183546 (+) True LOC122343008
XM_043236112.1 mRNA upstream 183920 23163695 ~ 23168007 (+) True LOC122342321
XM_043236110.1 mRNA upstream 571788 22777983 ~ 22780139 (+) True LOC122342317
XM_043237261.1 mRNA upstream 603307 22739960 ~ 22748620 (+) True LOC122342997
XM_043236120.1 mRNA downstream 237607 23613478 ~ 23614930 (+) True LOC122342330
XM_043237168.1 mRNA downstream 257927 23633798 ~ 24144571 (+) True LOC122342945
XM_043237352.1 mRNA downstream 709088 24084959 ~ 24091352 (+) True LOC122343046
XM_043237159.1 mRNA downstream 718009 24093880 ~ 24112912 (+) True kdm5a
XM_043237160.1 mRNA downstream 718009 24093880 ~ 24112912 (+) False kdm5a
TU45341 other upstream 184670 23163769 ~ 23167257 (+) False LOC122342321
TU45342 other upstream 184670 23163769 ~ 23167257 (+) False LOC122342321
TU45351 other upstream 192171 23157559 ~ 23159756 (+) True G30632
TU45355 other upstream 221738 23129106 ~ 23130189 (+) True G30636
TU45293 other upstream 572330 22778042 ~ 22779597 (+) False LOC122342317
XR_006250665.1 other downstream 741418 24117289 ~ 24122820 (+) False LOC122342976
XR_006250666.1 other downstream 757179 24133050 ~ 24141411 (+) False LOC122342990
XR_006250669.1 other downstream 1078454 24454325 ~ 24466400 (+) False LOC122343028
XR_006250668.1 other downstream 1089583 24465454 ~ 24470867 (+) False LOC122343023
TU45649 other downstream 1260493 24636364 ~ 24638654 (+) False LOC122343159

Expression Profile