RNA id: XM_043237519.1


Basic Information

Item Value
RNA id XM_043237519.1
length 6121
RNA type mRNA
GC content 0.43
exon number 15
gene id large1
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 15613118 ~ 15632452 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAACTGGAGGAGGCTGGGAAACAAACAGGGAGTGTTGTGTGGACTAGAGGCCGCAGTGTTCGTATTATCCGCCTCGATATCACAAAAACGATCGGATAAACGGCGCGTTTAGTGGATCGCGCCGCATAACTAGCGTGCAGGGGAACAGAAGACGATATTTCCCGCCAATCTTTACCACAGATTTACCACATCAATCAAATACAGCATGCGGCATTTTACGCGCTGATCTTGCATCTGAAATGAACACAGACGCGTCTTGAGAGACACTGACATATCTGTGCTATCGCTCCCGGTGATTTTTGACTGGATTCGTGAAGACGACTGACATTAAAAGCGTTAGTACTTCATTCATTCACATATCGCACGGATACCGAAGATTGTGTCTGTCTATCATTTGGGGTTTATTTTAGTGACAATAAAGGACTCGTCCAGTTACAAGTGATTCAACATCACAGAGCAGTGCCATGCACCCCctgtccaaacagctgatgccCACATAGAGGTCTCTGATCAGACACCCTCTGGCTACAGAGGATGCTGGGAATGTGTCGTGGGCGCAGGAAGTTTGTGGCTGCCTCCCTCGCCCTGATCTTTATCCCAGCCCTCACCTGGCTCTATCTGTCATCTGCAAATTTCACAGTCAAACCTCTGCCTCTGTCGCCGCTGGATCCTCAGTCATCTGTGCTGATCGGAGCGGCTGCTGAGCATCAGGATTTGGAGCTGCGACTACGAGATGTGGAGGAACGTAACCATGCGCTGCGGAGAGAGATTAGCCTGCCGCCCAGGGTTCCAACCCATAGCAGCCATCATAGGAACAGTCGCCAAGGCAACCATTTACACACCCATTCCACAGAAGAGGGTACAGGTGATAGCGAGGCTAAAAAAGGAGCAGCCTCGGGCAACAGTTCGGACTGTGTGCCTCAGCCTGTGGTGAACAAATGTGAGACCATTCATATTGCCATTGTGTGTGCGGGATACAATGCGAGCAGAGATGTTGTCACACTGGTCAAGTCAGTTCTGTTTCACAGGCGTAACCCACTCCACTTCCATTTCATCACGGACTCCATTGCTCGGAAGATCCTGGCCGATCTCTTTCACACCTGGATGGTGCCGGCTGTTCACGTCAACTTTTATGATGCTGATGAGCTGAAGtCTGAGGTGTCTTGGATCCCTAACAAGCATTATTCTGGCATCTACGGCCTGATGAAACTGGTGCTGACCAAGACGCTGCCCTCTGACCTACAGAAGGTCATTGTCTTGGATACTGACATCACCTTTGCCACAGACATCGCTGAGCTGTGGGTCGTCTTCCACAAGTTCAAGGGTCAGCAGGTTCTTGGTTTGGTTGAGAATCAGAGTGATTGGTACCTGGGGAACCTGTGGAAGAACCATCGGCCATGGCCAGCGCTGGGCAGAGGCTTTAACACCGGCGTGATTCTGCTGTTGTTGGATCGTTTGAGGAAGCTAAAGTGGGAGCAGATGTGGCGGCTTACGGCAGAGAGAGAGCTCATGAGCATGCTGTCTACATCTCTTGCTGATCAGGACATCTTCAATGCTGTGATCAAGCAGAACCCGTTCCTGGTGCACCAGCTGCCCTGCTTTTGGAACGTTCAGCTGTCGGATCACACCCGCTCCGAAAAGTGCTACAAAGACGTGTCTGACCTCAAGGTGATTCACTGGAACTCTCCAAAGAAACTACGCGTAAAGAACAAACATGTGGAGTTCTTCAGGAATCTCTATCTGACATTTCTGGAGTACGACGGGAACCTGCTGAGACGAGAGCTCTTTGGCTGTCCCAGCGAAACGGACCACAACTCGGAGAATCTTCAAAAGACACTGTCTGAGCTGGATGAAGATGACCCGTGTTATGAGTTTCGTCGGGAGCGCTTCACAGTCCACCGCACACACGTCTATTTCCTGCACTATGAGTATGAACCAGCCTTAGATAACACTGACGTGACACTGGTGGCCCAGCTGTCTATGGACAGACTTCAGATGCTAGAGGCCATCTGTAAACACTGGGAAGGGCCCATCAGCCTGGCCCTCTACCTCTCAGACGCTGAAGCCCAGCAGTTCTTGCGATACGCTCAGGGCTCTGAGGTCCTGATGAGTAGGAGCAATGTAGGATACCACATAGTGTATAAAGAAGGCCAGTTCTACCCTGTTAACTTGCTGCGCAATGTTGCTATGGGGCAGGTCAACACACCCTACATGTTTCTATCTGATATCGACTTTTTGCCCATGTATGGACTCTATGAGTACCTCAGGAAATCGGTTGTTCAGCTTGATATGGGGAACACTAAAAAGGCTCTTGTGGTTCCAGCTTTTGAAACTCTGCGTTATCGGCTGTCCTTTCCCAAATCAAAAGCAGAGCTCCTGTCACAGCTCGACATGGGCACTCTGTTCACTTTCAGATATCATGTCTGGACAAAAGGTCACGCTCCAACAGACTTTGCCAAATGGAGAACTGCTACAACACCATACCGAGTTCAGTGGGAGGCTGACTTTGAGCCGTATGTTATGGTCAGAAGAGAAAGCCCAGAGTACGACAGGCGCTTTGTGGGGTTTGGGTGGAATAAAGTAGCTCACATCATGGAGCTGGATGCTCAGgagtACGAGTTTGTGGTTCTGCCCAATGCCTACATGATCCACATGCCCCACGCGCCCAGTTTCGACATCACCAAGTTCCGCTCGAACAAACAGTACCGTGCTTGTCTGAAGACGCTGAAGGAGGAGTTTCAGCAAAATATGTCTCGGCGCTATGGTTTTGCCGCGCTCAAATACATGACAGTGGATAACAACAGCTAGCCAAGCACACCGTTGAGCGAACCGCTAAAATAACTGCCGTGAGCTGATGGAGGAGTGCTGTGTGACGGCACGTTTCTGGATGCGTTCAGTGAAACTGAGATGGCAGGGTCATTAGGAGGCACAGCTCATGATCATCCATTCATTCAGGGATCCGATAAGACGTTTATCAGTGGTGTTTGTTAGAAATAAACTGCTGATTAGAAGTCAAGCATGAACTTTTGTGAGAAGGCAAGCAAAGATCCCACAAATGGAGGCTTCTAGAATAAATAAAGTctgttgttatttataattgATGGACAACAACACTGATGCACATCAGATTAAAACCTTGaatttgtctgtctatctttcgGTCCTTCTAACCATTTGCTTGTGTATCTGTCAgtctttttgtttctctctatTATTTTAAGCATCTGTCTATATTTCTGTTTGTCTAGCTATATGTCTGCGTCTTTCTTTATAAGAGTCTGTCTTTTGATCTGCTTACCTATTTATCTTATATCTTTCCGTCTAGttttctgcctctctctctttttctctttctattcATCTTTACGATCAATATATCTCTAACAATATGTATATTTCTCTAACAATCTATATCTCTTAACCTCTCTAGCTTTCTATATCACATTTGATTTCGATATATATGTCTACACCTTTCTGTATAAACTTACTAACCATCTGTCTATGTctcttttcctgtttttctgtctagatccattttaaattttttaaaaacatctttatctACACTCACTATATCTCTAACGATCTATATCTAAACATCTGTCTATCTCCCTTCCATTTTGTCTGGCTATATCTTTAACAAGGTCTCATTATTTAACAATCTGTATTTCTTTACATCTCAACAGTCTCTTTGTCAAACTATCTGTCCACATTTCACTGTTTGCAAcggttctttttttaaattttattttgggctCTTTTTTATATTACGATAAGACAGAACAGGTGCCAACTGCATAAACGTAGCCTATAGCCTTATTAATTTGACCAACTAGCTGTTAGCCGAGAGGCAGTCAGTCTAATATTTGGATTAAATTTAGACTAATCTAtactattatgtattttaatgaaattatgagcagttgtaaagaaaacattagGCGACTAATTTGTAAAACTAGACTTAACCCTTTTATGTAGCTTGGATCAGATCTAACAGGAAGTGGGAAAGAAAGAGGGAGGCGTGATAGGGAAAAGTCATTGAGACAGGATTCAAACTCAGGACGTCCCATAGGATATCAGtaggatatttttatttttttaaatggctatATTACAATTTGTCCGTTTATATCTCTGTCTAGCAAACTGTCAAACAATCTCAACTGTATCTCTCTGTACATTTTCTTATAtcctctgtctctcttgctTTCACTCTCTTAATGCGATCTGCCTGTCTATTCATATCTATTCTTATCATATCAGTTTCTTGATATCAACACTTTGCTCCAGcagtttacaatttattttctctcgttctctttctctctcgatTCAAGGTTTCTTTCTCAGTGCGTTGACCGTTGTTGCGTTCGGTGAGGTATAGTTGGATATGTGTTCATTCTCAGCGCAGATGTGGACAAATGTAATAAACGGGGATCTTCATTTATCGGACTGGCAATAATACGTAATGAGAGGCCAAAGTGAACACGTCATTGACACATTAGAGATGGTTATTTAAGTGTTACTGACAGTCATTCTCCATCAAATGGCATCACACATCATACTAACAGACTGATGCACTTAAATACAGGCTTAATTAACagactcattttttttttcccgaatTTGTTAAAGATAGTGGAGTTTATGCTGATGCAGTAGCAGAACGTGTGTTTTGTAGTTACTTTGTACGCAGACTATCAGCCAACAACATGTCTGACTCAGGCTCTTGTtcatattttgcctttttgccACCCCGACAACACACAAACTCAACGTTGCCGAGACATCTCTTATCAGTTTTCTTATACCTATACGTCTCTACATTTCCCGTTATACTGACATTTAGCAGTTTGTCGCATTTATGATTGCGAAATTTGTGAACCAGATCTTTTGAAGGTGTTTATACACAATGTTTCGAACCTGATGCTTTCTTCAACGGGCATCTCGGCAGCACACGTGTGTATCGATGAAGTGCTTTTAATAGGCTACAGTCTGTGTCGTGTGCATTACAGTATGCCCGCGAGATCATCTTTATAAGCTGACCTCACCCACAGGACTGctgctttattttgtgttatttttattggttgGAACGGACCATACACCGTTCACGCTTAATGTTCTTCTATACAGCCCCTTGTGGCGAAGCTGAGAACGCACTCGCACTTGCATTGCATCACAAATTGCATTGTAATCATTTTTGGaagaagtgtttgtttacatacttGCTTAGAGTACATTGTGGGTCTaatacaaaatgattaaaaaaaaaaaaaaaagaatctacgAAAACAACGCAATGAATGTGTGCCACTTATATTCAGAATTGCAGGTGCAACAAAACAGACCTGGGCTAGTtgtcaatttattcattttttttttttctttagtggCTATTTCTCAGggtgggtttatttttaaatcagttcCTGTATAGAGATAAACTGTAATGTCTTGAGAaagctaattatatatatatttttaccggTAATGTCCtggaaacaaaaacagttaATTCAGTACAGGGGCAGGTTGTCACACTGTATGaagtaataactttttttctttttaaagcatttgacacacacatgtacacacacaaaaaccattttaaaaaactacaatGTCAGTATACTTTTGATTTTACTTGTTCGACCTgtattacaaaattacaatattccCTGTGACAGCTAGCCCCAGTCACCTACGTAAGAAGTAAAACCAGCAGATGACGTTAATGATGGACAACATTTATGTGTGACTTTTCTGAAGTGAAATCTTTTGAGGGATACTTTGTTCTAACCATCCCCATTTGTTTTGCATTCAGCCGTCCATgttactgtattaaataaagTGCTGATATGTTCTGATACGGACGTCTTATGCCCTTCTGTGCAAGTTTCATAGGTGGCAGTGTTACTACTGAGGTTCTGAGTGCCTAATGAGATGGTTGCTTCGAGCGGTGTCATTATTGTTCAGTATTTTCCAAGGTTGTACGCGAGTACTGATGTACTGAGCTGTATGTGCACACTAGCtgattgatgtgtgtgtttgatatgAGTATAAACAGCCACATGTCCAAGATAACACTGATAAAACAGCTTATGAATTCAA

Function

GO:

id name namespace
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K09668 LARGE; glycosyltransferase-like protein LARGE

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250641.1 lncRNA downstream 167889 15443764 ~ 15445229 (-) True LOC122342747
TU42788 lncRNA downstream 194880 15416856 ~ 15418238 (-) True G28850
TU42674 lncRNA downstream 399667 15209684 ~ 15213451 (-) True G28789
XR_006250554.1 lncRNA downstream 589255 15017785 ~ 15023863 (-) True LOC122342397
TU42586 lncRNA downstream 609689 15003149 ~ 15003429 (-) True G28738
TU42849 lncRNA upstream 100911 15733363 ~ 15733883 (-) True G28887
TU42857 lncRNA upstream 210953 15843405 ~ 15843739 (-) True G28895
TU42859 lncRNA upstream 295691 15928143 ~ 15928900 (-) True G28897
TU42891 lncRNA upstream 746248 16378700 ~ 16383670 (-) True G28916
TU42910 lncRNA upstream 779408 16411860 ~ 16419956 (-) True G28933
XM_043236562.1 mRNA downstream 1543 15601440 ~ 15611575 (-) True kiaa0930
XM_043236319.1 mRNA downstream 24210 15555251 ~ 15588908 (-) True LOC122342488
XM_043236578.1 mRNA downstream 464908 15143788 ~ 15148210 (-) True alg12
XM_043237809.1 mRNA downstream 476579 15124045 ~ 15136539 (-) False brd1a
XM_043236027.1 mRNA upstream 11737 15644189 ~ 15647843 (-) True sapcd1
XM_043236026.1 mRNA upstream 11737 15644189 ~ 15647729 (-) False sapcd1
XM_043236426.1 mRNA upstream 23623 15656075 ~ 15664306 (-) False slc37a3
XM_043236425.1 mRNA upstream 23623 15656075 ~ 15664306 (-) True slc37a3
XM_043236424.1 mRNA upstream 31991 15664443 ~ 15673234 (-) True zgc:171422
XR_006250613.1 other downstream 1543 15601440 ~ 15611575 (-) False kiaa0930
TU42583 other downstream 585500 15024587 ~ 15027618 (-) True LOC122342864
TU42581 other downstream 585500 15026110 ~ 15027618 (-) False LOC122342864
TU42549 other downstream 802981 14808597 ~ 14810137 (-) False LOC122342642
TU42539 other downstream 915932 14695860 ~ 14697186 (-) False LOC122342862
XR_006250809.1 other upstream 214517 15846969 ~ 15847087 (-) True LOC122343609
XR_006250818.1 other upstream 224932 15857384 ~ 15857502 (-) True LOC122343689
XR_006250819.1 other upstream 247669 15880121 ~ 15880239 (-) True LOC122343700
XR_006250820.1 other upstream 248068 15880520 ~ 15880638 (-) True LOC122343711
XR_006250908.1 other upstream 250049 15882501 ~ 15882619 (-) True LOC122343928

Expression Profile