RNA id: XM_043237520.1


Basic Information

Item Value
RNA id XM_043237520.1
length 4250
RNA type mRNA
GC content 0.45
exon number 31
gene id LOC122343211
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16710524 ~ 16724794 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTGTCTGAGAAACCTGCTATCGACGATTTAATAGTGAGATCTGCCTCGGCGTTTGTTTAGTGTTTAGAAGAAGTTTAAGGCAGTCTAACTAAGTTTTTCCACCCTAAACTATAAGTGCAAGGCAATACAGGACCTCCGTATTCGGCTCTTTTGGGTGAGATAGATTATGTTCCAGTAAACCATATATGAGATGATTATGTAATGGTGTGTGGATATCTTTGAGGACATGGCGAGCGATGCAAGCACCCTTTCCTGGAAGGTACCCACGCAGGACTGGGATGGGGGCATCAAAAGCCCTGACCTGGGTCCTGTTGGAGATGGCGGTCCCGTGAAGATCATCAAAGTGTGcttcagcagcagcaacaacctCAGCAAAAACTTCAAACTGGTCAAATGTGACAGCTCATGGCAGATGAAGACAATAATTCAGTCTATTCTGATCAGTGGGCGTTTGGGCCCAAATGTGCAAAACCCCGGATGCTTTGGGCTGAGGCTTAAACACCTCAAATCTGAGGAGCTCCACTGGCTTCATCCAGACCTGACTGTAGGAGAGGTTGAGCAGCGCTACGAAAGCCATCACGCCGAGGCGGAGTGGAGaTATGATCTTAGGATTCGCTACATTCCCACTGATTTCATGAAGAGGTTAAAAGAGGACAGGACATTCCTTTTGTATTTCTATCAACAGGTGCGTTGTGACTACATGCAGCATCATGCTAGCAAAGTTAGCGACGGCATGGCACTCCAGCTGGGCTGTTTGGAGATCAGGAGGTTTTACAAAGACATGAATGCCAAAGGTCTAGAGAAAAAGTCCAATTTTGACTTGTTAGAaaaagatGTTGGTCTGGACCTGTTCTTTCCTAAGGGACTTATTGACAGTATGAAGCCCAAGCCGCTGAGGAAACTCATCCAGCAAACGTTTCAGCAGTATGCATTACTAAAGGAGGACGAGTGTATGATCAAGTTCTTCGAGACCTATGGGGAATTCTCCAACTTTGACGAGGAAATATTTCCTTGCGAGCTAGTGCAAGGTTGGAGTTTAGCAGTGGATTTAGTCATTGGTCCCAAAGGCATTCGGCAGCGTACCAAAGCAGACTCCACCGCTGTTTGCCTTGCTGAATTTAAACAGATCCGATGTATCAAGTATAAcacacagagtgatggcagaacgTTGTTGCTTATCGAAATTGAGGGTGCCAAACAGCCTCTTTCCATCAGTGTGGCGTCTCTGGCCATTGCGGAGAACATGGCTGATCTGATCGATGGCTACTGTCGGTTGCTTAACCACACAGACTCATCTTTGATAGCTGGtccaaataaaagtaaatctcCTAAAGGTGTGCAGTTGCGCAACTCTCTCCCTGAAATTCCCTCCAGTAAGAAGACAGAAAGCTTCAGATACAGCAACTCTGATATATACTGTGAAATCCCGGATGAAAAGCCGCCACCACCTGCTAAGGTTGGACTCAACAGGAAAGATATTATCCTGAAATGTATGCTGGGCGAAGGTTTCTTTGGGGAGGTTCATGAAGGAGTTTACCATAAAAAGAATGGGGAGAAGATCAGTGTTGCGGTGAAGACCTGTAAAGAATGTGCACCTGACGTCAGAGAGAAGTTTGTGGGTGAAGCTGTAATCATGAAGAACCTGGACCATCCGCACATAGTGCGACTGATTGGAGTGATTGAGGAAGACCCGGTATGGATCGTCATGGAGCTGTGTCAGCACGGGGAGCTGGGGAAGTACTTGACAAAATGTCAGCAGAGTTTGACCAGTATAACTCTGGTACTCTTCAGCCTACAGATCTGCAAAGCGCTTGTTTACCTACAGGGAATGAACATGGTCCACAGAGACATAGCTGTACGAAATATACTTGTTGCCACACCTGACTCGGTGAAGCTGGGTGACTTTGGCCTTTCCAGATACATAGAGGATGAAGAATATTACAAAGCATCTGTTACTCGTTTACCGATCAAATGGATGGCTCCTGAATCTATTAACTTCAGACGCTTCACCGCAGCCAGTGACGTGTGGATGTACGctgtgtgtgtgtgggagattATGAGCCGGGGTAAACAGCCGTTCCACTGGCTGGACAACCGAGATGTGATTAACCAGCTGGAGCAGGGCAACCGGTTGCCCAAACCTGAGCAGTGCCCTCCTGCCCTGTACTCTCTCATGACCCGCTGCTGGAGCTACGACCCCCGCGAGAGACCCACCTTCACCGAACTGGCCTGCAACATCAGTGATGTCCACCAAATGGAGAAGGAGTTagaggtggagagagagagagacaaatcCCGTAACACCCGGGTCCTGGATCCCAAGCTTAACATTAGTGAACCTCCACCAAAACCTTCCAGAGTCAATACCAGCCGTTTCGGAAATACCCTTGGTGTCGGCCTACATCTTCAGCTTAATGAGGCTTTATGTGCCAGTTCACCAGACCTGGCCAGCCCATGTGATTACCAGTCACCTGTGGACTCAACTAGCATCCTCGCCATAACCACATCCCCACCTCGTCGCCGCAGTCTTGGGGAGGCTGAGTTCAGTTTCGGGCCGACCAGTAAGGAAGATGCTCAGCGGCTGTGGCAGGTAGAGAAGGAGCGCATGCAGGATACTTTGAAGATGCAGAAAGAACAGATGGAGGAGGACACAAAATGGTTAAAAAAGGAGGAGAAGCTTCTGGACCCAATGGTTCAGGAAAACACAAGCATTCCtgagACACCTGAACCACCACTTAGTTACGCCGAACTCCGTCAACCTCCTTCAAAACCACCTAGAATTGCAGTGCAGCCTGCGCCTACAGCTGAGCTGGACCGCTCAGAGGACAGTGTGTACCAGTGTGTCATGGACGTAGTGAAAGTGGTAGTGCAGCTAAAAAACGACATCAACACACTGACATCTACTGATTACATATCCCCAGTCAAGACTGTGGGACTCTCGTTAAGAAATCTGATCAACAGTGTGGGTGATATACTACCAACCCTGCATGATTCCTGTAGAACAGAGATCGAAGGCACTCAGAAGTTGTTGAATAAGGACCTGGCTGAGCTCATCAGTAAAATGCGTCTGGCCCAGCAGAacgccatcacctctctgaaGGAAGAGTGTAAGAAACAGATGCTGGCAGCAGCCCACACTTTGGCCATGGATGCCAAGAACCTGCTAGATGCTGTAGACCAGGCCCGAGTGCGCTCAAACTTGGCCAAACCCAAACCTGATGACCCAAACTCACCGACGGACTAGAAGAGCATCTTGGGACATGCCGACTCACAGCTTCAGTATAGGACACTCTGATACATCCATATAAGTTTGAAATGCAGTAACAGGACAAAACCAACACCAGTGACAGACATGAAACAGCCAATAGAAATTGAGGCAGCTCTTGCACTGCAGTTATATCATGTAAAGTGCTTCGTGCAAACATTTAAGATTTAGAACACCGATCAAGCCGGagggggtattccagaaagcagggGTTATCTTACAGTCACCTATATCCAGAACTGGTTGATTTAAATTGTGCTTGCAGTTTGCTTTTAGCCGTTTTTCTTCAATGTTGGAGTaatgtgttgtatttttataataaaaatacattacaaaaatgtcCTGTAGAAAAAAACACTCACATTTTGAACACATTCAAAATGTGTGTCATGggaataaatttgatttaactAAATGTTGATTTGTTATAATagtgctttaaaacatttgtcaCTGAAGCCTCATCAAAAGCGAACTTGCATGTAAGTGCTGAATACCTCTGAAATTATAACCTTTCCTTATATAATGAGCTCCACACCAGATAATGTTCAGAGAATTTGTTATAGCTACctgaaagtttttggttttGGAGATGAAAGTTGAGGTTATTCATGTACTTATCCATGAACTATACTTAAGCTACCCCCAAGCATTTTTGGTTACTTTGATTCTAAATCTTCTTTTAAGAAAAGTCTTGTACAAATGTTAATAACGTAGCTTGCTGAATCCTCCACAGTACACGACCCAACATTCATCTGGACATCTTGTCttattaaatatgtgtttatattgtagACCAAAACAATGCAAGAGAGATTCACGTCATGcacaaatattcttttttattctttgaaaacaacattaaaaggTGCCGTTACTTGTAAACGTGACTTTTACGAGACAGAACAGAACAAGAGACACGTAAGATAACGGATGTAAGTCTTTATATCCGTGTCTTTATTAAAGGGAACATTTCCTCCAAAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007172 signal complex assembly biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005925 focal adhesion cellular_component
GO:0005524 ATP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K05871 PTK2B, FAK2; focal adhesion kinase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43019 lncRNA downstream 8853 16701068 ~ 16701671 (-) True G29021
TU43009 lncRNA downstream 100525 16609636 ~ 16609999 (-) True G29012
XR_006250612.1 lncRNA downstream 159520 16550333 ~ 16551004 (-) True LOC122342602
XR_006250611.1 lncRNA downstream 164903 16544954 ~ 16545621 (-) True LOC122342601
TU42954 lncRNA downstream 245845 16464445 ~ 16464679 (-) True G28970
XR_006250656.1 lncRNA upstream 183839 16908209 ~ 16924965 (-) False LOC122342882
XR_006250657.1 lncRNA upstream 190952 16915322 ~ 16924965 (-) True LOC122342882
TU43160 lncRNA upstream 231085 16955455 ~ 17026339 (-) False G29127
TU43163 lncRNA upstream 231085 16955455 ~ 17026339 (-) True G29127
TU43183 lncRNA upstream 314457 17038827 ~ 17040834 (-) True G29143
XM_043236544.1 mRNA downstream 117430 16573127 ~ 16593094 (-) True LOC122342599
XM_043236534.1 mRNA downstream 167622 16537980 ~ 16542902 (-) True LOC122342596
XM_043237033.1 mRNA downstream 211685 16484567 ~ 16498839 (-) True LOC122342885
XM_043236543.1 mRNA downstream 227348 16477791 ~ 16483176 (-) True LOC122342598
XM_043236017.1 mRNA downstream 1030500 15674819 ~ 15680024 (-) True tmem19
XM_043236194.1 mRNA upstream 24346 16748716 ~ 16821470 (-) True kcnh5a
XM_043237664.1 mRNA upstream 116335 16840705 ~ 16851156 (-) True ppp2r5ea
XM_043237579.1 mRNA upstream 128629 16852999 ~ 16864423 (-) True sgpp1a
XM_043237581.1 mRNA upstream 140135 16864505 ~ 16867985 (-) False snapc1a
XM_043237580.1 mRNA upstream 140135 16864505 ~ 16867985 (-) True snapc1a
TU43020 other downstream 1564 16707774 ~ 16708960 (-) True G29022
XR_006250870.1 other downstream 689962 16020444 ~ 16020562 (-) True LOC122343883
XR_006250906.1 other downstream 690365 16020041 ~ 16020159 (-) True LOC122343926
XR_006250859.1 other downstream 692349 16018057 ~ 16018175 (-) True LOC122343872
XR_006250836.1 other downstream 692748 16017658 ~ 16017776 (-) True LOC122343847
XR_006250655.1 other upstream 162604 16886974 ~ 16900295 (-) True prkchb
TU43174 other upstream 282557 17006927 ~ 17017823 (-) True G29135
TU43209 other upstream 394258 17118628 ~ 17122129 (-) True xrcc3
TU43541 other upstream 912789 17637159 ~ 17638709 (-) False srd5a3
TU43577 other upstream 1010980 17735350 ~ 17736274 (-) True G29417

Expression Profile