RNA id: XM_043237522.1


Basic Information

Item Value
RNA id XM_043237522.1
length 2496
RNA type mRNA
GC content 0.48
exon number 6
gene id chrna2b
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16701043 ~ 16710156 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGGATGGGAGGACGGAGAGAGATGCTCAGTCCGGAGTAAACCCTGGAAACAGCAGGAGCCAGGTCATGAGTGCATCTATACACCCTGTGACACAAATGGAGTTACTCCGGGACGCACATTCTTCTAAAAACCCTCATTTTCGGATGCGTATGGAAATGAATGACACTTCTGTGCAATACGCAACTCGGAATCCGTGTTCCTGATCTTTCGCTGAACAGGTGCGCAGAAAGCGCATTGCCGTGCTTTTTCgcgcagagagaaagaaacttcgttcgagTTCATAAACACGGTGGATTTAAGCTGCTTCGCTCGAAACATTTTAcggaaaattatttttgtcaacacttttttttttttttttttttttgccaacagtgataaatgtaatttaaaacaaaaataaaaacttgacgAGAGCACCTAACCACGACCGGCAGAGGATGCAGAgcatgacagaaaaacacagaaagcaCTGAATTGTACGGAAATGCAGATGAAAGCGTAGAAATGTACTGAAAGTAATTGGCTGTATGATGGAGCGCTTTGAGAATCAGCGGTTCTTCCTGAGGATTTCTCTTCTCTGCATTATCCTATGTGAGTCAATCTCTTGTTGTGAGAAGACTCATTCACACGCTGAAGATGAActctttaaaaagctgtttgATGGATACAACAAGTGGTCAAGGCCCGTACCAAACACCTCTGATGTTGTCATTGTCAAGTTTGGTTTGTCTATTGCCCAGCTGATTGATGTGGACGAGAAGAATCAGATGATGACAACAAATGTCTGGCTAAAGCAGGAGTGGAACGACTATAAACTACGCTGGAAACCTTCAGACTTCGACAATGTGACTTCCATCAGGGTTCCGTCAGAACTAATCTGGGTCCCGGATATAGTTTTGTACAACAATGCAGACGGAGAGTTTGCGGTGACCCACATGACCAAAGCCCACCTCTTCCACACAGGTAAAGTGCGCTGGGTACCACCTGCCATCTACAAGAGCTCATGCAGCATCGATGTCACCTTCTTCCCCTTTGACCAGCAGAACTGCAAGATGAAATTCGGCTCGTGGACTTACGACAAAGCCAAGATCGACCTGGAGCGCATCGAGAACACGGTGGACTTAAAAGACTACTGGGAGAGCGGCGAGTGGGCCATCATCAATGCCGTGGGCACCTACAACACCAAGAAGTACGACTGCTGCCACGAGATCTACCCAGACATCACCTACTTCTTCATCATCCGCCGTCTGCCGCTCTTCTACACCATAAACCTCATCATCCCCTGCCTGCTCATCTCCTGCCTGACCGTGCTGGTCTTCTACCTCCCGTCAGATTGCGGTGAGAAGATCACGCTGTGCATCTCGGTCCTCCTCTCGCTCACCGTCTTCCTGCTGCTCATCACTGAAATAATCCCCTCCACCTCGCTCGTGATCCCGCTCATTGGCGAATACCTCCTCTTCACTATGATCTTTGTCACCCTGTCCATCGTCATCACCGTCTTCGTGCTTAACGTCCACCACCGCTCGCCCAGCACTCATAAGATGCCCCGTTGGGTTCACTCAGTCTTCTTGGATTTGATCCCGCGGTGGTTGTTTATGCGGAGACCTGCACCGGACAGCCGTCGCAGGCAGAAACTCCTCCTCCTGCAGCGGCAGGGCCAAGGAATGACGTCACGGGTGCTTGGACCGGCAAACGCGACCCTCAGTACATCTACCAGCTGGTTCAGAGGGGAGGAAGAGTCCCGCAGACGCTTCTGTTATAAGGACTTAGAACTGGGAACGCTGTCCTCTGCGATCTCGCTTTCACTCCAGACCCCTTCGCCCTGCCCTCTAGCCACGACTCCGCCTACTCTGCAGAAATTCGGCCCTTCCTCTAGACTGGAGTTGGGCCTGGCTTCCAGGCAGCTTGGTGGAAGAGTTAATGTCACAAAGCGGCCTGACAACATGATGCCAGACAACCCGGGATTCCCCCTGTCCCCCAGTGTCCTGCAAGCTCTGGAGGGGGTTCACTACATAGCAGACCACCTGAGAGCAGAAGATGCTGACTTTAGCGTAAAAGAGGACTGGAAGTATGTTGCTATGGTAATAGACAGAATCTTCCTGTGGATGTTCATCATAGTTTGTTTGCTGGGCACAATCGGACTTTTTCTTCCGCCCTGGCTCGCGGGCATGATCTAAAAAACACCTTAGTGAGTATACTGTATGAACAATAAGGACTTCTAACGTTTAGGCTTCCACTGGAAGAACGCCCCTTCTAGCAGGGAACGTCACGCATGGGGTCAGATGCATGTTTGACAAGGAACGCGGCCTCAAATACCTGACATTTTCTTAGGTCAGTTACTGAAAGGAAAGTCACATATTAAAGGAAGCTTGTCTATGCTTGTATTTGAATGTATAACcctaaatattattgtaaaaattaaaagtgcCAACTGGAAAGGACTACGTTAATTTAACtgattacacaaataaaagctCTGAGGTGGCTATTTC

Function

GO: NA

KEGG:

id description
K05312 CHRNN; nicotinic acetylcholine receptor, invertebrate

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250728.1 lncRNA upstream 825 16698521 ~ 16700218 (+) True LOC122343214
TU43008 lncRNA upstream 91039 16609724 ~ 16610004 (+) True G29011
TU42977 lncRNA upstream 160883 16519411 ~ 16540160 (+) True G28991
TU42969 lncRNA upstream 225710 16474743 ~ 16475333 (+) True G28985
TU42953 lncRNA upstream 236353 16464445 ~ 16464690 (+) True G28969
TU43024 lncRNA downstream 38562 16748718 ~ 16752589 (+) True G29026
XR_006250658.1 lncRNA downstream 187359 16897515 ~ 16911342 (+) True LOC122342883
XR_006250659.1 lncRNA downstream 187359 16897515 ~ 16911342 (+) False LOC122342883
TU43090 lncRNA downstream 230860 16941016 ~ 16941310 (+) True G29078
TU43099 lncRNA downstream 327117 17037273 ~ 17038220 (+) True G29086
XM_043236038.1 mRNA upstream 83825 16615345 ~ 16617218 (+) True LOC122342226
XM_043236529.1 mRNA upstream 243746 16436391 ~ 16457297 (+) True ptprb
XM_043236532.1 mRNA upstream 273857 16398632 ~ 16427186 (+) True LOC122342594
XM_043236530.1 mRNA upstream 273857 16400881 ~ 16427186 (+) False LOC122342594
XM_043236542.1 mRNA upstream 302544 16378638 ~ 16398499 (+) False LOC122342597
XM_043237784.1 mRNA downstream 111957 16822113 ~ 16838424 (+) True rhoj
XM_043237031.1 mRNA downstream 214861 16925017 ~ 16932206 (+) True six4b
XM_043236321.1 mRNA downstream 227643 16937799 ~ 16939687 (+) True six1b
XM_043237785.1 mRNA downstream 289749 16999905 ~ 17026338 (+) True rtn1b
XM_043237786.1 mRNA downstream 306453 17016609 ~ 17026338 (+) False rtn1b
TU42966 other upstream 226662 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 715317 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 859188 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 1045862 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 1145361 15439334 ~ 15555682 (+) True G28806
TU43729 other downstream 1590259 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 1726304 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 2173023 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 2580064 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 3021106 19731262 ~ 19786128 (+) False G29835

Expression Profile