RNA id: XM_043237532.1


Basic Information

Item Value
RNA id XM_043237532.1
length 802
RNA type mRNA
GC content 0.59
exon number 1
gene id LOC122343218
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 28212246 ~ 28213047 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

attcttttccaGCAATAAGCATCCGTTGCCTAGTGCTGTAACACATCAAACTCTAGCACTGAATCTCTAGTCGTTCGCTCCTCCTCTTGCTCCCAAAACCCATCCAGAGGCTCAGAGCCCGTGCGACAGAATCAATAAAGTCCCCAACTAACCAGGCTTTTTGCCCCGCGGGGCCACAGCGGCGGGTGGAGATGGAAAGAGGagtgtgagagaggagagagctGATCCAGACGCTCACAAACACCGAGCAGAGGCGCACCGATCCTCCCTGGACTCTCACGCTCACCATCCATGGCTTCAGAGACGGAGCTGAGCTTCAGCGAGGACCTGCAGCTGACCGAGGTCATGCGTCTGAGGGTCCAGTCGCTGCAGCAGAAGGGTCAGAAGCGGCAGGACGGAGAGAGGCTTCTCCTGCCTCACGAGTCCGTTTACCGGCTGGACTTCAGCGAGCAGGACCTGAGCTTCCTCCGCTGGAACGTCAGCCTGCGAGGAACCGGACGCTTCACCGTCACCGGCATCTGCCAGCTCTGGACGCCCGATCTGACCAACCTGATGACCAGGCAGCTGCTGGACCCCATCGGCCAGTTCTGGAGGAACGCCGGGGACCCCGAGGACCTGCCCATCAAGTGTCTGGAGGCGGACATCCAGGAGTTCGGAGAGAGGATCGCGGAGCTGGCCAAAGTGCGGAAAGTCATGTACTTTCTGTTCGCGTTCAAAGAGGGAGCGACCAAAGACAACATCTCCTGCTCTTTGACCTTCGGCAAAAACCACTGAGAGAAGGCACCTCTCCAGGCGTCGCTTC

Function

GO:

id name namespace
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250577.1 lncRNA downstream 82438 28127214 ~ 28129808 (-) True LOC122342474
TU46868 lncRNA downstream 91086 28120250 ~ 28121160 (-) False LOC122342471
TU46847 lncRNA downstream 115755 28095894 ~ 28096491 (-) True G31737
TU46844 lncRNA downstream 131865 28080175 ~ 28080381 (-) True G31736
TU46834 lncRNA downstream 269442 27941679 ~ 27942804 (-) True G31728
TU46888 lncRNA upstream 13367 28226414 ~ 28228301 (-) True G31759
TU46889 lncRNA upstream 13367 28226414 ~ 28228301 (-) False G31759
TU46891 lncRNA upstream 13367 28226414 ~ 28228301 (-) False G31759
TU46898 lncRNA upstream 13367 28226414 ~ 28228301 (-) False G31759
TU46905 lncRNA upstream 31943 28244990 ~ 28250107 (-) True G31765
XM_043236295.1 mRNA downstream 24989 28181566 ~ 28187257 (-) False LOC122342472
XM_043236294.1 mRNA downstream 24989 28181567 ~ 28187257 (-) True LOC122342472
XM_043236297.1 mRNA downstream 34660 28171251 ~ 28177586 (-) True LOC122342473
XM_043236293.1 mRNA downstream 81866 28120247 ~ 28130380 (-) True LOC122342471
XM_043236288.1 mRNA downstream 93914 28113502 ~ 28118332 (-) True LOC122342469
XM_043236728.1 mRNA upstream 155408 28368455 ~ 28382557 (-) False pkma
XM_043236727.1 mRNA upstream 155408 28368455 ~ 28380614 (-) True pkma
XM_043236726.1 mRNA upstream 155408 28368455 ~ 28380614 (-) False pkma
XM_043236155.1 mRNA upstream 741301 28954348 ~ 28956291 (-) True LOC122342383
TU46883 other downstream 25468 28185330 ~ 28186778 (-) False LOC122342472
TU46793 other downstream 144484 28065297 ~ 28067762 (-) True eif1
TU46518 other downstream 567514 27642692 ~ 27644732 (-) True G31508
TU46508 other downstream 596305 27539355 ~ 27615941 (-) True G31503
TU46510 other downstream 659653 27539355 ~ 27552593 (-) False G31503
TU46919 other upstream 150978 28364025 ~ 28365196 (-) True G31776
TU47051 other upstream 631146 28844193 ~ 28846421 (-) True G31868
TU47079 other upstream 760306 28973353 ~ 29012765 (-) True G31890

Expression Profile