RNA id: TCONS_00010156


Basic Information

Item Value
RNA id TCONS_00010156
length 1414
RNA type mRNA
GC content 0.40
exon number 4
gene id XLOC_005287
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 17695986 ~ 17698669 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTCTATATTACGTAGTGGATACCTGAACCACACAcgcagagagaaaaagagagagagagagagagagagagagagagagagagagagagaaagagagagagagagagagagagagagagagagagagagagagagacagagcgattCTGTCAAAATACCCACTGTTATTAGGGCGAAGTGCAGGCACATGTGCGCGCATTCGGTCCGAGCCTCATTTAAATAGTAAAGGATAATTAGTTGGGCAAGAAATTCAAGTCGATCCGAATTTGATACACTGACAGGTAACCCAAGCATCTCTCATTGTCCGTCCCATtagcatatacatatatatataagtagGTGAGCGGATGAGAGACGCTTATCACACAGCCTTACCTCTGCTCCAGATCAGCGCGAGGAGACTCTTCACAGGTCAGATGCTGCTTTTTGCTTAACATCTAACAACTCTTGTTGAATTTATTAGAGTCgctatgtttatatgtttatgttttatgtttaattcattttaaagctATTTCTGTAAGAGAGGATTGACTAGAAAGTAGAGTAAATTGCATTGTAGCATTGATCAAGAAGATGCCAAAGTAAATGTTACAGCTAATCtattattttgatgtattttacactttttgaatgttacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatgcatacacatcaTGTAAAGGAATGTTTTATTCTCTCAACAGTTTGAATATGTCACTTACTTCCATCCTCTCAGCTGAAGCCATTGAAAATGCTGTCAAAGACTGCCAAGCTCCGGACTCCTTTTGTTACAAAAAGTTCTTCCAGCTTTGTGGCCTGAGCCAGAAAACTCCTCAGGAGGTGAAGGATGTCTTCCGTATCATAGATGAGGATAACAGTGGATTTATCGAGGAGGCTGAGCTCAAGTTCTTTCTCCAGCGGTTTTTCCCGGGGGCACGAACCCTGACAGAAAAGGAGATTAAGAGCCTCCTCACAGCTGCAGATGATGATAGTGATGGCCGAATTGGAGTAGATGAGTTCCAGACTATGGTTTCATCCTGAAAGATTCCTCAAGCCCTCGGCTATATGCACCGCAGCCTCTTCTGTCATTTTGCTTTTTACACCtgatttcttttcaaaataaGAATCAGCACATGAAGTAAACAAATGACTTTTGAATACATGTGTCTGTTCGTTGTTCCACATTCACCTCAAATGACCAATGATAAAACTGTtcagggaaaataaaataaagacactaAACTGTTGCATTTgccttactgtttttttttttttttttttttttttttggatctgcTTTAGCTTTTTACACTGGAAAAAGTGATGAGttgatttagctttttttttaaaaaaggagtaagtttaatt

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030805-4 Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm and nucleus. Is expressed in inner ear; pronephric duct; yolk; and yolk syncytial layer. Orthologous to human OCM (oncomodulin) and OCM2 (oncomodulin 2).

Ensembl:

ensembl_id ENSDART00000191384

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011114 lncRNA downstream 729178 16964656 ~ 16966808 (-) False XLOC_005273
TCONS_00011115 lncRNA downstream 729251 16965104 ~ 16966735 (-) True XLOC_005273
TCONS_00011113 lncRNA downstream 744340 16938808 ~ 16951646 (-) True XLOC_005271
TCONS_00010804 lncRNA downstream 752738 16942204 ~ 16943248 (-) True XLOC_005272
TCONS_00011112 lncRNA downstream 949439 16743052 ~ 16746547 (-) False XLOC_005265
TCONS_00011116 lncRNA upstream 23132 17721801 ~ 17727540 (-) True XLOC_005291
TCONS_00011117 lncRNA upstream 525865 18224534 ~ 18227730 (-) True XLOC_005295
TCONS_00010171 lncRNA upstream 711942 18410611 ~ 18411624 (-) False XLOC_005297
TCONS_00011118 lncRNA upstream 711942 18410611 ~ 18411753 (-) False XLOC_005297
TCONS_00010172 lncRNA upstream 711942 18410611 ~ 18411753 (-) False XLOC_005297
TCONS_00010155 mRNA downstream 9582 17657224 ~ 17686404 (-) True XLOC_005286
TCONS_00010153 mRNA downstream 40303 17633354 ~ 17655683 (-) False XLOC_005285
TCONS_00010154 mRNA downstream 57491 17633398 ~ 17638495 (-) True XLOC_005285
TCONS_00010152 mRNA downstream 93028 17591786 ~ 17602958 (-) False XLOC_005284
TCONS_00010151 mRNA downstream 93028 17591786 ~ 17602958 (-) True XLOC_005284
TCONS_00010159 mRNA upstream 6549 17705218 ~ 17707517 (-) False XLOC_005288
TCONS_00010160 mRNA upstream 6552 17705221 ~ 17707449 (-) True XLOC_005288
TCONS_00010162 mRNA upstream 11756 17710425 ~ 17712498 (-) False XLOC_005290
TCONS_00010163 mRNA upstream 11986 17710655 ~ 17712393 (-) True XLOC_005290
TCONS_00010164 mRNA upstream 95615 17794284 ~ 17810543 (-) True XLOC_005292
TCONS_00010135 other downstream 697544 16997206 ~ 16998442 (-) True XLOC_005275
TCONS_00010131 other downstream 794227 16901645 ~ 16901759 (-) True XLOC_005269
TCONS_00010127 other downstream 949439 16743282 ~ 16746547 (-) True XLOC_005265
TCONS_00010126 other downstream 949670 16743052 ~ 16746316 (-) False XLOC_005265
TCONS_00010121 other downstream 1041191 16654681 ~ 16654795 (-) True XLOC_005263
TCONS_00010161 other upstream 8123 17706792 ~ 17706901 (-) True XLOC_005289
TCONS_00010183 other upstream 1039744 18738413 ~ 18738529 (-) True XLOC_005303
TCONS_00010211 other upstream 2490500 20189169 ~ 20189286 (-) True XLOC_005319
TCONS_00010220 other upstream 2876971 20575640 ~ 20584439 (-) False XLOC_005327
TCONS_00010232 other upstream 3871114 21569783 ~ 21569899 (-) True XLOC_005332

Expression Profile

//