RNA id: XM_043237550.1


Basic Information

Item Value
RNA id XM_043237550.1
length 4475
RNA type mRNA
GC content 0.46
exon number 18
gene id prkcq
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13238214 ~ 13254897 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgtgtgtgtgtgtgtgtttgatcccACACTTCTTCCAGCCCCGCGGCCTTCACCTGCTGGGACAGTCGCTATCGACTCCGTTTGATGAAATATCACGTTCAGAGAGCCGGTGAAGACTCGCTATAAAAGCCGTGACATGAAAGCCTCCGCGTCCAGCCGCGTCCTCCCTGTCCTTCGTCTTCTCTCTCTATCCTGGTGGCGGGTAAAAAGCGGCGGCCCTCGGTGACGCAGGAAGTGCGGTTCAAGCCGTCGGTGAAACGACAGGAAATACTCGGCGGCATCACATTCACAGAGCAAAGAAAGAGAGTTTATAAGCCAGagttttgaggaaaaaaatactgtttggCTGAACTGAAATAACGCACTTAAATGTTGAATTCAACGATGGGAAGGAAAATTGCCTTGTAATTAAACTAACACAGATATTAGCAAATCATGTTGCATGCTTCGTTTTAAAGCTCTCCTTCCTTAAATCTAGCGGGAAACTCTCACGAAAGCAGGTTTGATAATGCCAGGCGAAAAAAAATTCGTATCCTCGCCTTTTCAGCGCTAATTCTTTGGTATATCCTGACAGGCGTGTTATTTTCAGCTTACCCAAAATCATTggttaacctttttttttttttttttactttttaacaaacttttgcaagaaaaaaagtggCGCTGAATCACTGCCCACTAAGaaatactgttaaaatgatcaactaaaagcttttttttccctcatttgcTCTACCACCGTGACAGGATAAAGCCACAGAAAACTGGAGACGTCGCACTATAGCAGCCGTCTAGCAATGTCAACGACCAAGTCAATGCATTCgtttcttctttttcacaacgcaagtaaacattaaaatgctcaCCCTTCGAACGGTACCAGTTTTAGCGCGGCGGAAACACTCACCGACCTATTTCGTGTGACGTTACGTTCAATTCCACAACAACGcaacgctaaaaaaaaaaagctacaccGCTTATGTTTTAACGGAAGTGCTTTATTgaaatgttcacatttttgtttctgaaagCTAACGAATTATTGGTATTTCTCAGTTAAGGCATTCGagggccaaaaaaaaaaaaaaaaaaaaaagtacaaatctaTAACACACACATCAGGTCTGAGCAAAGCGTAAGCGTCCCGAGCGTGACGCGTGATAGCGCTGTGACTCAGCGGGGAAGTGAATCCTGTCAGGGCTGTCGGGATGGCAGTTTTGTGTTTCACGTCTATTAATAGTTCTTTCTGTCTGCTTCTCTCCCTTCGCCAGTGGCCTTACAGCTTTCAACTGGTGGCTAtaagagagctggatctgatgGACTTCAACCGGAGAACAGCAGTATTACTTTGGATGCCGCGGAGCTGAGGACATCGCCTCTGCTGAGATTCAAAAGCAACACGTCGGAGatcacaaatatgaaaatacacaTCAAATAGGAGCGCGTCGGTGTGCAGAAGATCCTTACAGTGGTGTTACCCAACGCGCTTCTGAAGGGAACCTCTATCCGTCCGGTTCACAGTCATGTCTCCGTTCCTGAGGATCGGTTTTTCCAGTTTCGAGATGGACCCTGGGCTTGCCTACCACGAAGAAGTCCTCAATCCATACTGTGCTGTCTACATGAAAGAGGCTGTGGAGACCGAAAAGGGTCAGGTGTACAAACAGAAGCGGCCCACCATGTATCCCCCGTGGAGCAGCACGTTTGACGCTCACGTCCACCGAGGACGAGTGATGCATGTGGTGGTCAAGGACAAGACGGCTGAGCTAAAGACGGAGGCTACTGTTCAACTCGACACCCTCGCTTCACGCTGCAAGAAAGAAAACGGCAAACTAGAGATCTGGGTGGAACTGAAGCCACAGGGTCGCTTATTAATGGAGGCACGGTATTTTTTGGAGAGGAGTGACGCTGCGGGTCACGGTGAAGGAAACGGAGAAACCGAACGGGAAAAAGAAGGGGTGTTTGCCCTGCATCACAGACGAGGAGCCATCAAACAGGCCAAAGTTCACGTGGTCAAATGTCACGAGTTCACCGCCACCTTTTTCCCTCAGCCGACTTTCTGTTCGGTCTGCAAAGAGTTTGTCTGGGGCCTGAATAAACAGGGATATCAGTGTCGGcaatgcaatgcCGCCATCCATAAAAAGTGCATAGACAAAGTCATCGCCAAATGCACAGGCTCAGCAGTAAACAGTAAAGAAACCATGATCCATAAGGAACGTTTTAAGATTGACATGCCTCACCGGTTTAAAGTGTATAACTACATGAGTCCCACGTTCTGCGAGCACTGTGGAACCTTGTTGTGGGGTCTTGCTCGGCAGGGCCTTAAATGTGAAGaGTGCGGCATGAACGTTCACCATAAATGTCAGAGGAAAGTAGCAAACCTTTGTGGCGTCAACCAGAAGCTAATGGCAGAAGCCCTGGCTATGATTGAGAGCACTCAACAGCAGGCTCGCAGCTCTCGGGATACTGAGATTGCTGGTCGAGAGGGTCCAGTGGGCGTAAGTCAAGCAGGGGTCACTAGAGAGCCTTCGGGCCGCTTACCAATATCACCCCTCACGCCTGCACCGCCTCTACCACGCAAAGAGAATCAAGGTATTTCATGGGACACTCCGGCTGAGGGCCGCAGGCCAAGTCTGGAACAGCCTGAACCCCTGTATGCCACCCCACGCAAAGAGCACCAAAAGTTCAACCTAGATAATTTTAATCTGCATAAGATGCTGGGCAAGGGCAGCTTTGGAAAGGTGTTCCTGGCTGAGCTGAAAGGCACGGGGCAGTTCTTTGCAGTGAAGGCCCTGAAGAAAGATGTAGTACTAATGGATGATGATGTTGAATGCACTATGGTGGAGAGGAGAGTGCTGTCTCTGGCCTGGGAACACCCCTTCCTCACGCATCTCTACTGCACCTTCCAGACCAAGGAAAATCTTTTCTTCGTGATGGAGTACTTAAATGGGGGCGACTTAATGTTCCACATCCAGGCCTGCCACAGATTTGACCTCCCACGGTCCACGTTCTACGCGGCCGAGATCGTTTGTGGGCTGCAGTTTCTACATTCTAAAGGCATCGTGTACAGAGATCTCAAGCTGGATAACATCTTGCTAGACATCGATGGTCACATCAAGATCGCAGACTTTGGCATGTGCAAAGAGAACATGTTTGGAGAATCTAGAACGTGTACCTTCTGTGGAACACCAGACTACATCGCTCCCGAGATTCTGCTTGGGCAGAAGTATGGGACGTCTGTAGACTGGTGGTCATTCGGCGTCCTCCTTTACGAGATGTTGATTGGCCAGTCTCCATTTCACGGCCATGACGAGGAAGAGCTGTTTCAGTCGATTCGCACAGATGACCCCTGCTACCCACGCTGGTTAACTAGAGATGCACGGGACATCCTTGTAAAGCTATTTGTCCGCGAACCTGAACGAAGGCTGGGCGTGAAAGGAAACATACGACAGCATGCGTTCTTCAGAGACATGGACTGGAGCGCACTAGAGAAACGACAGGTGGAGCCGCCCTTCAGGCCTACTGTGAAATCAGCAAGCGACTGCAGTAATTTCGATAAGGAGTTCATAAACGAGAAGCCTCGGCTTTCCGTCACAGACTGTATAATGATCAACAGTGTGGACCAGACCATGTTCAACAACTTCTCCTTCATCAACCCCGCTATGAGCCGTCTCAAGAGCCCCTGACACGCAGACGAACGGACACTCGTGCAAATACTGTGAAAAAGTCTGAACTAATAGGCAAACACTCACCTGAATAACATATCGGCCTCTAGTCGACCTCGTTTAATGCTATATTTCGTTTTTATGACGTACTTGCCTTTTTGtgaagtaaaatgcaaaaaaacattaacagcaaaagtttcaaaaacattttttccccttcttcAATCCTCAATCAACTAAATCATTGATTCCTTCCCTGAATCAATCATTTGTGAACGTATTGAACTGAACGGGGCTCGTTTAAATTGTATAACAGAAAAATCCCCACCGCTGCTTAAATACACAGACTGTCTGGAAATGTAGAATTGTAAGAGATGTACGTATTTGACGATGGTGTTGAATTATTAAGCCATATACTTGCGTTTCGTGAAATTTGCTGTGCGTTTTAGTGGAATGAATATGCTGTGATGTATACATAATGAATTCTGTAGGCCTTGTATAGAGTGTTGTgaatgatggaaaaaaaaaattaactacttTAAGTTGCTTCTCAGTTAGGTTCTATGCTCTTAGATTGTACAAAGTTACATGAATTCTTGGAGGTTAACGTGTGGttctttattacaaaatgaTGTTGTTTTCTGTATAGTAAgcattatgttttcttttgagaCATACTTATGCGATCCTTTCTTGTTATATTGTACGTATGGTTATTTTACGGTGCACGAAAAATCAAAACCTTACagatgaatgaattaaaaactcTGCTCCGGAAACCCattaacattaaagaaaaatcgCATTTC

Function

GO: NA

KEGG:

id description
K18052 PRKCQ; novel protein kinase C theta type

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41894 lncRNA upstream 8858 13231664 ~ 13231983 (+) True G28256
TU41893 lncRNA upstream 10287 13230162 ~ 13230554 (+) True G28255
TU41892 lncRNA upstream 12240 13228381 ~ 13228601 (+) True G28254
TU41876 lncRNA upstream 51074 13189496 ~ 13189767 (+) True G28246
TU41854 lncRNA upstream 62864 13176963 ~ 13177977 (+) True G28233
TU41906 lncRNA downstream 58037 13312934 ~ 13321116 (+) True G28267
TU41946 lncRNA downstream 183039 13437936 ~ 13440022 (+) True G28295
TU41953 lncRNA downstream 212507 13467404 ~ 13470135 (+) True G28298
TU41976 lncRNA downstream 255959 13510856 ~ 13513593 (+) True G28312
XR_006250763.1 lncRNA downstream 261733 13516630 ~ 13520457 (+) True LOC122343375
XM_043236949.1 mRNA upstream 13517 13190604 ~ 13227324 (+) True sfmbt2
XM_043236950.1 mRNA upstream 13517 13190606 ~ 13227324 (+) False sfmbt2
XM_043236650.1 mRNA upstream 65043 13165740 ~ 13175798 (+) True itih5
XM_043236344.1 mRNA upstream 86489 13150736 ~ 13154352 (+) False kin
XM_043236448.1 mRNA downstream 38091 13292988 ~ 13301954 (+) True il15ra
XM_043236449.1 mRNA downstream 38092 13292989 ~ 13301954 (+) False il15ra
XM_043236450.1 mRNA downstream 38097 13292994 ~ 13301954 (+) False il15ra
XM_043236451.1 mRNA downstream 38099 13292996 ~ 13301954 (+) False il15ra
XM_043236442.1 mRNA downstream 50847 13305744 ~ 13325959 (+) False LOC122342559
TU41815 other upstream 86483 13150756 ~ 13154358 (+) True kin
TU41253 other upstream 1549712 11689314 ~ 11691129 (+) True ndufb2
TU41254 other upstream 1549712 11689314 ~ 11691129 (+) False ndufb2
XR_006250736.1 other upstream 1824614 11386130 ~ 11416227 (+) False acss3
TU41889 other downstream 50772 13305669 ~ 13315684 (+) False G28252
TU41890 other downstream 50772 13305669 ~ 13315684 (+) True G28252
TU41888 other downstream 58971 13313868 ~ 13315684 (+) False G28252
TU41881 other downstream 68391 13323288 ~ 13530631 (+) True G28249
XR_006250630.1 other downstream 151032 13405929 ~ 13433606 (+) False vezt

Expression Profile