RNA id: XM_043237551.1


Basic Information

Item Value
RNA id XM_043237551.1
length 3289
RNA type mRNA
GC content 0.47
exon number 18
gene id prkcq
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13238214 ~ 13254897 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTCTCTCCGCTTCCTTTAGTCTGCGAGGAGAGGTGTGAAGCGCGCGCGTCACGTGCGCGTGCTTTCAGAGCTTTACTTCGCTGCGCGAGGAGCCGCGTCCGCGTCGCCGGTGGCTAtaagagagctggatctgatgGACTTCAACCGGAGAACAGCAGTATTACTTTGGATGCCGCGGAGCTGAGGACATCGCCTCTGCTGAGATTCAAAAGCAACACGTCGGAGatcacaaatatgaaaatacacaTCAAATAGGAGCGCGTCGGTGTGCAGAAGATCCTTACAGTGGTGTTACCCAACGCGCTTCTGAAGGGAACCTCTATCCGTCCGGTTCACAGTCATGTCTCCGTTCCTGAGGATCGGTTTTTCCAGTTTCGAGATGGACCCTGGGCTTGCCTACCACGAAGAAGTCCTCAATCCATACTGTGCTGTCTACATGAAAGAGGCTGTGGAGACCGAAAAGGGTCAGGTGTACAAACAGAAGCGGCCCACCATGTATCCCCCGTGGAGCAGCACGTTTGACGCTCACGTCCACCGAGGACGAGTGATGCATGTGGTGGTCAAGGACAAGACGGCTGAGCTAAAGACGGAGGCTACTGTTCAACTCGACACCCTCGCTTCACGCTGCAAGAAAGAAAACGGCAAACTAGAGATCTGGGTGGAACTGAAGCCACAGGGTCGCTTATTAATGGAGGCACGGTATTTTTTGGAGAGGAGTGACGCTGCGGGTCACGGTGAAGGAAACGGAGAAACCGAACGGGAAAAAGAAGGGGTGTTTGCCCTGCATCACAGACGAGGAGCCATCAAACAGGCCAAAGTTCACGTGGTCAAATGTCACGAGTTCACCGCCACCTTTTTCCCTCAGCCGACTTTCTGTTCGGTCTGCAAAGAGTTTGTCTGGGGCCTGAATAAACAGGGATATCAGTGTCGGcaatgcaatgcCGCCATCCATAAAAAGTGCATAGACAAAGTCATCGCCAAATGCACAGGCTCAGCAGTAAACAGTAAAGAAACCATGATCCATAAGGAACGTTTTAAGATTGACATGCCTCACCGGTTTAAAGTGTATAACTACATGAGTCCCACGTTCTGCGAGCACTGTGGAACCTTGTTGTGGGGTCTTGCTCGGCAGGGCCTTAAATGTGAAGaGTGCGGCATGAACGTTCACCATAAATGTCAGAGGAAAGTAGCAAACCTTTGTGGCGTCAACCAGAAGCTAATGGCAGAAGCCCTGGCTATGATTGAGAGCACTCAACAGCAGGCTCGCAGCTCTCGGGATACTGAGATTGCTGGTCGAGAGGGTCCAGTGGGCGTAAGTCAAGCAGGGGTCACTAGAGAGCCTTCGGGCCGCTTACCAATATCACCCCTCACGCCTGCACCGCCTCTACCACGCAAAGAGAATCAAGGTATTTCATGGGACACTCCGGCTGAGGGCCGCAGGCCAAGTCTGGAACAGCCTGAACCCCTGTATGCCACCCCACGCAAAGAGCACCAAAAGTTCAACCTAGATAATTTTAATCTGCATAAGATGCTGGGCAAGGGCAGCTTTGGAAAGGTGTTCCTGGCTGAGCTGAAAGGCACGGGGCAGTTCTTTGCAGTGAAGGCCCTGAAGAAAGATGTAGTACTAATGGATGATGATGTTGAATGCACTATGGTGGAGAGGAGAGTGCTGTCTCTGGCCTGGGAACACCCCTTCCTCACGCATCTCTACTGCACCTTCCAGACCAAGGAAAATCTTTTCTTCGTGATGGAGTACTTAAATGGGGGCGACTTAATGTTCCACATCCAGGCCTGCCACAGATTTGACCTCCCACGGTCCACGTTCTACGCGGCCGAGATCGTTTGTGGGCTGCAGTTTCTACATTCTAAAGGCATCGTGTACAGAGATCTCAAGCTGGATAACATCTTGCTAGACATCGATGGTCACATCAAGATCGCAGACTTTGGCATGTGCAAAGAGAACATGTTTGGAGAATCTAGAACGTGTACCTTCTGTGGAACACCAGACTACATCGCTCCCGAGATTCTGCTTGGGCAGAAGTATGGGACGTCTGTAGACTGGTGGTCATTCGGCGTCCTCCTTTACGAGATGTTGATTGGCCAGTCTCCATTTCACGGCCATGACGAGGAAGAGCTGTTTCAGTCGATTCGCACAGATGACCCCTGCTACCCACGCTGGTTAACTAGAGATGCACGGGACATCCTTGTAAAGCTATTTGTCCGCGAACCTGAACGAAGGCTGGGCGTGAAAGGAAACATACGACAGCATGCGTTCTTCAGAGACATGGACTGGAGCGCACTAGAGAAACGACAGGTGGAGCCGCCCTTCAGGCCTACTGTGAAATCAGCAAGCGACTGCAGTAATTTCGATAAGGAGTTCATAAACGAGAAGCCTCGGCTTTCCGTCACAGACTGTATAATGATCAACAGTGTGGACCAGACCATGTTCAACAACTTCTCCTTCATCAACCCCGCTATGAGCCGTCTCAAGAGCCCCTGACACGCAGACGAACGGACACTCGTGCAAATACTGTGAAAAAGTCTGAACTAATAGGCAAACACTCACCTGAATAACATATCGGCCTCTAGTCGACCTCGTTTAATGCTATATTTCGTTTTTATGACGTACTTGCCTTTTTGtgaagtaaaatgcaaaaaaacattaacagcaaaagtttcaaaaacattttttccccttcttcAATCCTCAATCAACTAAATCATTGATTCCTTCCCTGAATCAATCATTTGTGAACGTATTGAACTGAACGGGGCTCGTTTAAATTGTATAACAGAAAAATCCCCACCGCTGCTTAAATACACAGACTGTCTGGAAATGTAGAATTGTAAGAGATGTACGTATTTGACGATGGTGTTGAATTATTAAGCCATATACTTGCGTTTCGTGAAATTTGCTGTGCGTTTTAGTGGAATGAATATGCTGTGATGTATACATAATGAATTCTGTAGGCCTTGTATAGAGTGTTGTgaatgatggaaaaaaaaaattaactacttTAAGTTGCTTCTCAGTTAGGTTCTATGCTCTTAGATTGTACAAAGTTACATGAATTCTTGGAGGTTAACGTGTGGttctttattacaaaatgaTGTTGTTTTCTGTATAGTAAgcattatgttttcttttgagaCATACTTATGCGATCCTTTCTTGTTATATTGTACGTATGGTTATTTTACGGTGCACGAAAAATCAAAACCTTACagatgaatgaattaaaaactcTGCTCCGGAAACCCattaacattaaagaaaaatcgCATTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41894 lncRNA upstream 6231 13231664 ~ 13231983 (+) True G28256
TU41893 lncRNA upstream 7660 13230162 ~ 13230554 (+) True G28255
TU41892 lncRNA upstream 9613 13228381 ~ 13228601 (+) True G28254
TU41876 lncRNA upstream 48447 13189496 ~ 13189767 (+) True G28246
TU41854 lncRNA upstream 60237 13176963 ~ 13177977 (+) True G28233
TU41906 lncRNA downstream 58037 13312934 ~ 13321116 (+) True G28267
TU41946 lncRNA downstream 183039 13437936 ~ 13440022 (+) True G28295
TU41953 lncRNA downstream 212507 13467404 ~ 13470135 (+) True G28298
TU41976 lncRNA downstream 255959 13510856 ~ 13513593 (+) True G28312
XR_006250763.1 lncRNA downstream 261733 13516630 ~ 13520457 (+) True LOC122343375
XM_043236949.1 mRNA upstream 10890 13190604 ~ 13227324 (+) True sfmbt2
XM_043236950.1 mRNA upstream 10890 13190606 ~ 13227324 (+) False sfmbt2
XM_043236650.1 mRNA upstream 62416 13165740 ~ 13175798 (+) True itih5
XM_043236344.1 mRNA upstream 83862 13150736 ~ 13154352 (+) False kin
XM_043236343.1 mRNA upstream 83862 13150738 ~ 13154352 (+) False kin
XM_043236448.1 mRNA downstream 38091 13292988 ~ 13301954 (+) True il15ra
XM_043236449.1 mRNA downstream 38092 13292989 ~ 13301954 (+) False il15ra
XM_043236450.1 mRNA downstream 38097 13292994 ~ 13301954 (+) False il15ra
XM_043236451.1 mRNA downstream 38099 13292996 ~ 13301954 (+) False il15ra
XM_043236442.1 mRNA downstream 50847 13305744 ~ 13325959 (+) False LOC122342559
TU41815 other upstream 83856 13150756 ~ 13154358 (+) True kin
TU41253 other upstream 1547085 11689314 ~ 11691129 (+) True ndufb2
TU41254 other upstream 1547085 11689314 ~ 11691129 (+) False ndufb2
XR_006250736.1 other upstream 1821987 11386130 ~ 11416227 (+) False acss3
TU41889 other downstream 50772 13305669 ~ 13315684 (+) False G28252
TU41890 other downstream 50772 13305669 ~ 13315684 (+) True G28252
TU41888 other downstream 58971 13313868 ~ 13315684 (+) False G28252
TU41881 other downstream 68391 13323288 ~ 13530631 (+) True G28249
XR_006250630.1 other downstream 151032 13405929 ~ 13433606 (+) False vezt

Expression Profile