RNA id: XM_043237560.1


Basic Information

Item Value
RNA id XM_043237560.1
length 3203
RNA type mRNA
GC content 0.47
exon number 19
gene id strip2
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1762143 ~ 1783683 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCAAAGTGGCCCGAGCCATCCTCTATTTGGCACAAGGTgtgtatacagtacacacaacAACAATTCAGTGGGTGAATCTCTTGAAAACAGTCAACCCCCAAATCAAAGGAAGGAAAAGTCTGTTAAGCATgtgtgtttgatgagTGTGACACAGAAACCGATGTCCTCTACTGGTCCAGACACAACGTCTTCCTCCTCTACGACATGGGCATCTTCACGGCTCTGCTGGAGCTCCTCAGCATGGAGATAGATAATAACCAGGCGTGCAGCAGCGCAGTGAGAAAACCAGCTATTTCTCTGGCTGACAGCACTGAACTCAGGGTTCTTCTGAGCATCATGTATCTGATGGTTGAGACCATTCGAGTGGAAATGGAGGGTGACAGTCCAGAGAGGAAGGCAGCCAGAGAGGCCTTTAAAACAGAGTTGGGTTCACCCCTTTATAACGGAGAGCCCTTTGCCCTCCTCCTCTTCACCATGGTAACCAAGTTCTGCAGCATGAATGCGCCCCATTTCCCCATGAAGAAAGTGCTGCTCTTACTGTGGAAGACCATTCTGTTCACTCTGGGAGGCTTCGAGGAGCTGCAGGAGATGAAGGTGAGAATGAGAGACCAGTTGAACCTGCCGCCACTTCCTGAGGACAGCATTAAGGTGGTGCGAAACATGCGGGCAGCTTCTCCTCCAGCCTCGGCCATGGAGCTCATCGAGCAACAGCAGCAACAGAAGAGAGGACGCAGGAGTCGCCGGAGTGCCTTTGTTGATAGCTTGGAAGGAGACAGTCCATATGCCAAGAAACAGCCACTGGTCAAACAGGACAGCCTGGACACGTACAATGAACGGGACCCTTTCAAAAACGACGACGCGCGAGATGAGGAAGATGACCCAGAGGACGTGGACAGTGGCATCGAGGGAGAGGTCGACCCTCTCGACAGAGACGTTATTATCCAGCCACCTCCCCCACCGCCACCACTGCGCCCACCGACAGAGAGACTGTCCTTTCCCAAGGGATTGCCATGGGCTCCCAAAGTCAGagagaaagacattgAGCATTTTCTGGAGACCAGCAGAAATAAATTTATCGGCTTCACCTTGGGAAATGACATTGACACTTTGGTTGGGTTACCCAGACCCATACACGAGAGTGTGAAGACTTTGAAACAGCACAAGTATGTCTCCATCGCAGAGGTCCAGATCAAGAAAGAGGAGGAGCTGCAGCAGTGTCCCATGACTATGGGCGAGGAGGAGGTGGAAGAAACACCTGCAGAGATTCTATATTTGGGAATGTTGCCTAGTCTCTCTCAGTATGTAATTGCTCTACTGAAGCTCCTTCTGGCTGCAGCTCCAACCTCCAAAGCAAAGACGGACTCTATCAACATCCTGGCCGACGTTCTGCCGGAGGAGATGCCAATCACCGTCCTCCAGAGCATGAAGCTGGGCATTGATGTGAACAGACACAAGGAGATTATCGTCAAAGCGATTTCAGCTCTCCTGCTACTGCTGCTCAAACACTTCAAACTCAACCACATATACCAGTTTGAGTATGTGGCTCAGCACCTGGTGTTTGCCAATTGCATCCCGCTCATCCTCAAATTCTTCAACCAGAACATCATGTCTTACATCAGTGCCAAGAACAGCATTTGTGCCCTGGATTTCCCTCATTGTGTGGTTCACGAAATGCCTGAACTCACAGCTGAAAGCCTGgaAGCTGGTGACAGTAATCAGTTCTGCTGGCGTAATCTCTTCTCCTGCATCAACCTACTCAGGATCCTAAACAAAATTACCAAGTGGAAACACTCAAGAACTATgATGCTGGTGGTGTTCAAGTCTGCTCCTATCCTCAAGAGGGCGCTCAAGGTTAAACAGGCTATGATGCAGCTCTATGTTCTCAAACTTCTCAAGATACAGACCAAATATCTGGGTCGCCAGTGGAGAAAGAGTAACATGAAGACCATGTCTGCCATTTACCAGAAAGTCCGACATCGGCTCAATGACGACTGGGCGTATGGGAATGATATCGACGCTCGGCCGTGGGATTTCCAGGCGGAGGAGTGCGCGCTGCGCGAGTGCATAGAGAAATTCAACACTCGGCGTTACGATAAGAATCAGAACGGTGATTTTACACCAGTAGACAACTGCCTCCAGAGCGTTTTAGGCCAGCGTGTTGACCTGCCCGAAGACTTCCATTACAGCTACGAGATGTGGCTTGAAAGAGAGGTTTTCTCCCAACCGATTCAGTGGGAAGGTCTGCTGCAAGCCCAGTGATCCTGCTGGGATCGTCACGGGacttttgtttcttacaaaaccGACACAATTACTGTGGGATCATGCCAATGCTCAAAGCAGCGGGGGTCGGCCGTTCCTGTCATATGATGACTTCTTGTACATAGAGATATGTGAATACAGAATGGTGGTCTTCCTTATTCTGTAAAAGAATTTCATGCTTTGGgtgaaaacacaaatatatctGTTTATGGAATGAAAGAACGATCTCTTCTCTAATAACTGAAGCACACTTTATGTATAACGACTGCACAATACAGTGTTCTAACATGTATGCTATTCTGAAATGATGGAGATTTATTTATATGGTCGCTCACTGTGTCTAACCGTGGAattgtttatgtatgtaaatacgAAGACTTCACGAGGTACCACCTGAGGCAGGGTCTCTCTCAAAAAGTGGTTGTGTGGAGttgctgtgtttaaaaaaaatcatctcgtcctttttttttctcgttccCTGTAGCATCATGTGTTAAACAGGAGGGTGTCTATGTTCTCGAAGGCAGTGAGTCTCCACTTTTTGTCCCACGTAGCACTGCACATCACACAAAAGACCCCCGAGCAGCACAATACACACATTCAAAGTGTCCTTGGTGACTGTACTGTCACCCACACTAAGCATGTCGCTCACTAAACGGTGCTGGTTTTTAACACTTCATTTCATCTCCTTGTTAATTGCGTCATTCTCTTCTGAGGTCTTGCGAAGCACTGTATAAAATGTACGAAATCTTCTCTCCATCAAAACGGTGCAACAGACAGCACACCTCACTGTTTATTCATGCTTGTTTTACAGGGTTtaagcatttcttattttttatattctcattGTTTTGTACTGAACTAAGGTGCTGTGTAAATGAAACTACCTATTATGATCCATGCCAAATACAGCACCgtcacattttttatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37284 lncRNA upstream 75900 1688978 ~ 1693389 (+) True G25071
XR_006250791.1 lncRNA upstream 96529 1670617 ~ 1672760 (+) False LOC122343488
TU37142 lncRNA upstream 211511 1556392 ~ 1557778 (+) True G24968
TU37102 lncRNA upstream 437446 1329465 ~ 1331843 (+) True LOC122342419
TU37074 lncRNA upstream 482216 1286612 ~ 1287073 (+) True G24925
XR_006250569.1 lncRNA downstream 554 1784237 ~ 1787234 (+) False LOC122342451
TU37231 lncRNA downstream 4948 1788631 ~ 1789276 (+) True G25030
TU37306 lncRNA downstream 46995 1830678 ~ 1830968 (+) True G25086
XR_006250555.1 lncRNA downstream 116213 1899896 ~ 1901886 (+) True LOC122342405
TU37447 lncRNA downstream 122147 1905830 ~ 1906106 (+) True G25192
XM_043237824.1 mRNA upstream 8920 1732155 ~ 1760369 (+) True ahcyl2b
XM_043237825.1 mRNA upstream 37604 1726783 ~ 1731685 (+) True tmem209
XM_043237826.1 mRNA upstream 37604 1726830 ~ 1731685 (+) False tmem209
XM_043237827.1 mRNA upstream 42968 1717521 ~ 1726321 (+) True ccnd2b
XM_043237839.1 mRNA upstream 103144 1661550 ~ 1666145 (+) False ada2b
XM_043236919.1 mRNA downstream 8624 1792307 ~ 1797892 (+) True si:dkey-14d8.21
XM_043237780.1 mRNA downstream 16803 1800486 ~ 1804566 (+) True LOC122343361
XM_043237778.1 mRNA downstream 21906 1805589 ~ 1808700 (+) True LOC122343360
XM_043237779.1 mRNA downstream 22147 1805830 ~ 1808700 (+) False LOC122343360
XM_043237781.1 mRNA downstream 25609 1809292 ~ 1816478 (+) True mapk11
TU37269 other upstream 96330 1670512 ~ 1672959 (+) True LOC122343488
TU37077 other upstream 478065 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 1103759 654092 ~ 665530 (+) True G24771
TU36683 other upstream 1395207 373527 ~ 374082 (+) True G24632
TU36680 other upstream 1395465 373527 ~ 373824 (+) False G24632
TU37230 other downstream 609 1784292 ~ 1788096 (+) True LOC122342451
TU37871 other downstream 1331825 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 1335846 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 1655448 3439131 ~ 3439654 (+) True LOC122342808
unassigned_transcript_299 other downstream 1657229 3440912 ~ 3441500 (+) True LOC122342809

Expression Profile