RNA id: XM_043237563.1


Basic Information

Item Value
RNA id XM_043237563.1
length 7798
RNA type mRNA
GC content 0.44
exon number 43
gene id LOC122343235
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13763390 ~ 13784708 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGTCCTGATCCAGTTGTGCGCCGGTGAGCCGATGCTTCGTTGGACAAGAATGGCTCCACGAGAGGCAACGCTTTTAGGAATAATTATTGTGTTGTCAGGCCACATTCACTCTGTGTTTACAGCTCAAAttgggtattttattacagatttatGTAAAACGTACGGCAGCGGCGTCTTTTATACCTTTAACAAAACTGCGTTTCATCTGAAGACAACATGTCCCGTAACTCTTACGCACTTCAATCATGCTGGAGTGGACTGTCACGTCATCGTCCAGCGAGGACCGAATGGCCTGATGGACAGAGTCGAAATCATCGTGAATAAAGTCCCGACCCTCGTCCGCAACAACACCGTGACCGTGGAAGGCAGCAGGATTTCCCTTCCGTACGATCACACCTATCAGCGCGTGTTTCATTATGGAATCTATACCAGGCTCCAAAGCAAAGTTTTGCCGTTGTCTGTCACGTGGTACAGCGTAGCGGATGGCGTCAGTTCACTTTGGGTACAACTGAACCTGGATTTAGTGGAGGGTACGAGTGGACTTTGTGGGTACAGGAACAGCACGGAAACTATGCTGCAGCTGATATCCACCAACGTCTTCTCCGATGGTCAATGTCTGACGCAAGACTCTTttgcacagacaaacacagtttgtaAAAATCTATTGTCCCATGCTTACGAATGTGTGGCTACTAAATATCAAGCCTACCTGAATCTGtgctacaaaaatatgaatggaCTGTGGCATCGGGAATCGAACTGCTCATTTTTTAAAGAGCTCTCGCTTATGTGTGGGAGCTCCAGTCCATTGTGGTCAGTGTGGAGGTCAAAGAGCAACTGCTCCCAGCCTGTTTGTCCGGGAGACCTGCACTATGTAGAGATTGGTCCTGCTTTCCCGCCGACCTGCAGCAACCCACAGAATTACACAGCGGAGCTCACCGGCACCTGCCTGCCTGCTGAAGGAAAGGTCCTGAATGACCACGTTTACGGTTACCGTTCCATTTATGTGGAGGAATGCCCATGTGTGCATGGAAAGACGATGTATGCACCAAGGCAGGAACGCAGAACAAAGTGCCAAACCTGTACCTGTATCAGTGGAAACTGGGCATGTTCTGCAAACACATGTCCAGCCAAGTGTATTATTGAGGGCCAGTTTATCACTACATTCGATGGCAAGCGGTATTCTGTTCTAGATAGATGCACCTTTGTGGCTGCAAGGGGGCTTAACTGGACATTGAACATTCAATATTCTGGGCAAGGTGTTGCCATAGAAATGGCATATCTTAACATCAACCGGgaaagATATGCCTTCTCTGCAAACAGCATGCAACTGAACAACGTAGAAATCAGCGACCTATCACAGACTGAGTCTACCACCGTCTTTTGGCAGTCTTCAATGTTCATTCAAGTTCAGACTTCATTTGGCCTGAAAATGCAAGTTCAAGTCTCTCCagaaattcaaatttatttgaatttgccACAGGCCGAAAACACTAAAGgTCTCTGTGGAACTTTTAATAATGACACAAGCGATGACTTCACTACTTTCAGTGGCATCATAGAAAGTTCGGTTCAGCTTTTTTCCCAGTCATGGTCAATGGGCACTTGTACCCCAATTACTGGATGCATCAACACTGACAATGAGATATTTGCTGAAGAGAACTGTGACCAACTCAAAGATCCAGAAGGAGTGTTTGCTGTGTGTCATGATTACGTACCTGTTTCGCCTTTTATTGAGgcatgtgttaaaaaaacatgccaGTGCTCGGCTGCATTGCAGGAATGCTTATGTGTCTCCTTTGGCAACTATGCAAAAGCCTGTGCAAGTCAGGGAATCGCTGTCGGGGAGTGGAGATCAGAAACAAACTGCATTCCTTCGTGCATGGGCAACCTGAGGTTTGACTATGCCACGCTGGCGTGTAACCATACCTGCCGTTCCCTCTCGGGCCCCGATCCCACCTGTGAGGTGGTGGATGACCCTGTGGAGGGCTGTGGATGCACATCAGACTCTCACCTGAGCAATCAACAGACCTGCAGCCCTCGTCCGCTGTGCAGCTGCCACCACCCAGGAGGCATCACGCCTCCAGGTCCCGTGGTTATCGGTGGACGCCAATGCTTGTGTGAAAACGGACAACTTCATTGTCCTAAAGTTTGCAATTGCACAGTGGGAAAGATATGTGTGGATTGCGCACAAATACCAGTAAACACAGCTCTCAGGACATGTGAAAGCTTGACCAAACCTGTAAGTGATGACAACAGCTGTATCAGCGGCTGTTATTGTCCACATGGCCTTTTTGAAGATCATAACGGCGGTTGTGTGGCTCACGATAACTGCACCTGTGAATTCAGCGGGAGGGTGTATGAAACTGGGCAGAGCGTGGAGACCAACTGTAAAATATGCACATGTAGGGGTGGCGAATGGTCTTGTGTGGATGAGGCATGTTCAGGAGTATGTGAGGTGTTTGGAAATGGGCAGTATCGCACCTTTGACTCCAAATGGTACAGATTCGATGGCCACTGTCAGTACACCTTAGTAAAGGACGCTGGTTCTACTGCGCAGTTTGCAGTTAAAACAGAGAGTGTTCCATGTTGTGACGAGTCTTTGACGTGTTCCCGCGCCATCTCAGTGGAGCTCTTGGGTGCAGTGACTCTGATGTTGAGCGACATGAAGGTAACTGAGAGACTTCAGGCAGGGGGTGCAGTGTTGGCAGAGCCCCTGTACTCCATCCAAACTGTGGGCCTCTACATTATTATCTCAGCTCCTGGACTGGGGATCACTATAATCTGGGACAAACATACCAGGGTCACCGTCCAACTACAGCCTCAGTGGAGAGGTCGAGTGTTGGGGCTTTGTGGGAACTTTGATGGAAAGGTGACAAATGACCTTCTGACAAGCAGCTCCTCAgaagttttcagtgttttggacTTTGGGAATAGTTGGAAGACGGCAACTCCGCCATGCACAGATGTAACCCATGAAATATTTCCTTGTGAACGACAATCCTACTGTGCCGCCTGGGCCCAGCGGCGATGTATGATCCTGAAATCGGACACCTTTATAGATTGCCATCTTAAGGTGGATCCAGAGTCTTATTACCAAGCCTGTGTTTTGGAGTCCTGTTCTTGTGAGTTTGAGGGAAAGTTTCTTGGATTTTGCACTGCTGTCTCAGCTTACGCAGAGGCATGCAGTGCAAAGAATGTCTGTATCAACTGGAGAACTCCAGATTTGTGTCCGGTGTATTGTGACTATTACAATGAAGTGGGCCAGTGCACCTGGCATTACAATCCCTGTGGCCAGGTTAAGACCTGTGGTACTAATATCCTCTTTACAGGAAAACTTGAAGGATGTTACCCAAAATGTCCTGAAGAGACCCCATATTACGACGAAAACCTAGGTAAATGCACCATTCTGGACAACTGCACTTGTAACTTCATGAACAGAGTGCTATCACCTCCTGATGAAATGTGTAGTTCTTCAACATGCTGTAAATGCCTTGATGGACAAATTGTCTGCCATCCTACATTTACATCTACAACTACGACTACACTATATTATACATCAACATCTCAGCCATCTACAGCAATAACCAATACAGCCACAACACAACTGCCAACAACAGAATACACAACAAAACCAACAATTGAGAAGACAACAGAATACACAACAAAACCACCAACTGAGAAGACAATAGAATCCTCTACAACTCCAATTAAAGACACAACTACAACAGAACTACCATCATCTGTGAGCACAACCACAACAGAACCACCAACCTCACATACTAAGAAATACACAACACAACTACCAACAACAGAGAGCACAACAGAACACAGAACCACAACACATGGAACAACAACTGAAAGTACAACAGAACAATATACAACTCCAgttaaagaaacaacaaaacacagaacCACAACAACAATGTCAACAACTGAAATAACAATGGAACAATACACAACACCAAGggaagaaacaacaacaacaacacaaccAACACCAGCTAAAAGCACAACAGAACACAGAGCCACAACAAGTTTATCAACAACTGAAAGTACAACAGAACAATATACAACTCCAGTGGAAGAAACAACACCACCACCAACTGAGAGCACAACAGAACACAGATCCACGACACATGCAGCAACAACTGAAAGTACAACAGAACAATATACAACTCCAGTGGAAGAAACAACACCACCACCAACTGAGAGCACAACAGAACACAGATCCACAACACATGCAGCAACAACTGAAAGTACAACAGAACAATATACAACTCCAATGGAAGAAACAACCACAACACAACCACCATCAACTAagagcacaaaaaaacacagaaccACAACAACATTGTCAACAAGTGAAAGTACAACAGAACAATATACAACTCTAGAGGAAGAAACAACCAAAACACCACCAACTGAGAGTACAGCAGAGCAGAGAACCACAACACGTCTGTCAACAACTGAAAGTACAACAGAACAATATACAACTCTATTTGAAGAAACAACCACAACACAGCAACCACAAACTAAGAGCACAACAGAACACAGAACTACAACAACTTTGTCAACAACTGAAAGTACAACAGAACAATATAAAACTCCAGTTGAAGAAACAACACCAACACCAATTGAGAACACAACAGAGCACAGAACCACAACACGTCTGTCAACAACTGACAGTACAACAGAACAATATACAACTCCAATGGAAGAAACAACTACAACACAACCACAACCAACTGAGAACACAACAGAGCACAGAGCCACAACACCTTCGTCAACAACTGAAAGTACAACAGAACAATATACAACTCCAGTGGAAGAAACAACCACAACAACGCCACCAACTGAGAACCCAACAGAGCACAGAACCACAACACATTTGTCAACAACTGAAAGTACAACAGAACAATATACAACTCCATTTGAAGAAACAACCACAACACAACCAACACCAACTGAGAAcacaacagaacagaaaacCATGACACATCGGTCAACAACTGAAAGCACAACAGAACAGAATACAACTCAAGTGAGAGAAAAAACTACAACACAATCACCCACCTCAGGAAGTACAACAGAATATACAACACAAACACCAACAAGTGAGAGAACAACTCAACCTGCTACAAAACAATACACAACTGCAACCACAACTACTGAAGCTACGACTTCAGTAAAATATAGCACTTCGGTGTCAACAGTGTCTACAACAGaaataataatagtcaCTGGTCCTCCTATCATCAGTCTAACTCCAAACTCATCTCAAGAAGTGCATACATCAACTATtcctacaacaacaacaacctctTTACTGACATCTGTACTCAGTACTACAATACCTACCACTGAACACACAACACCAGtGTGTGAGTGCAAAGATGTGATGCGAAATCAAAGCTGGATGTGCGGAGATACTTGGAGAGAGGACTGTGCTGATAAAACCTGTAATGCTGGAGTGATTGTGGTAAAATCCATTCCCTGTCCAACATCCACAGACAGGACTGATTGCCCTAGAAACATGAAGTCTTTGGTCAGAGATGAAGAGACTTGCTGTATGAGCTGGGAGTGTGATTGCCAGTGTCAGGTTTATGGAGACCCACACTACATCTCCTTCCAGGGGATCACTTTTGACTTCATGGATAACTGCACCTACACTCTAGTGGAGGAGCGAGTACTGCAGCAGAGATTAAGCATTACTGTAGACAACTACTACTGTGTGCCGGAAATTGATAATTCCTGTTCTAGGGGAATCACATTAAAGTACCAGAATAATATTGCCACACTTATGGTAACAGAGGCATTTACTGTAGAgTGTACTTTGAACCAGGAGATTATAAAAGCACCATATGAAGATCAGGTCTTCAAGTTTGAAAACAGTGATAGCCAGGTCTTCATCTACATCAAGCCTATCCGTTCCTATGTTTCTCTTTCACCTTTCAACAATCTGTTAATTAACCTAGCAATGGAGTACTtccaaaacaacacacaagGACAGTGTGGTGTCTGTGGTGGGCAGTCGTGTATACGAAGAGATGGTGTAATTGAAGATGACAACTGCTGTGATAAGACCGCATACGACTGGGTAGTAGAAGACCCTCTGAAACCCTACTGCAAATCTGTGCTCACCAATGTTCCGTGTGTCCCTCCCCCATCACTTtcacctccacctccaccccCACCTCCGCCACCCTGCCATCCTACAATATGTGACCTACTTCACCACGAAGTGTTTGCGGAGTGTGGTAAAAGGATCAATCTTACGTCCATAGAGAAGAATTGCAGGTTTGACTACTGTTCATACAATAGTAGTGTTGGTGCCTGTTCCTCTCTGGAGTACGCAGCATCAGAGTGCAAAAGGCTTGGTATTTGTGTAGACTGGAGATACCTTACCAGTGGCTCCTGTGAGATCACATGTCCAGAAGGAATGATGTACAACGAGTGTCGAGAGTCTCCAAATGATGTCTGTCAAGGAGgTGTTCGTGTGCCTGCAACTTCTGTGGTTGGTCTGAGATCAGGCTGCTTTTGTCCAGATGACCAGATGCTTGCGGAAACACACAAGCAAATCTGTGTGTCTGAATGCACGAcCTGTAAAGGGCCATTGGGTGAGCCCATGCCGGCGGGAGCAGTATGGGAATCAAACTGTCATATATGCACATGTAATAACCAGACTAGAACTGAAGAGTGCATACCCAAACCTCGGGAACCCACTCCAGTCTGCAGCGCTTACTCCATCCTGGTCTCCGACTGCTGTGACAATCAGATTTGCGTTGAGAAGAAATGCGAGTACAATGGAAAGACTTATATGGTTGGTGATCGGTGGACAGACCCTTCACGTCCTTGTAAGTCTTTCAGTTGTACAGAGACAGGAACTGAGGTTGAGAAAACCGTGTGTCCAGAGCAAACCTGTGCTGAGGATTTACGAGTGTGGGATGAACACCATTGCTGCTATTCATGTAATGTTACATGCACTGCCAGACTGACGAGAATGAACCTCACGATTGCTAACTGCACACAAGAAGTCGAGCTGCCCACTTGTGAGGGCCAGTGTGAGACACGCAACAGGTGGGTTCATACTAACGGCACACTTCAGCTCGAACAGAGTCGCCAGTGCTGCAAGGAGAGAAGTAATGAGATGAGAGAAATCGTGCTGACTTGCAATAAAAACTCTTCAACCCACTTAACATACAGACACGTCACACGCTGTGAATGCAGGGTTGCAGGTTAAGTTTACCtggcatatatataaatgttagtTAGATTCGATTCATTTCGGTGCGCGTGAGTTATACATGCCAAATTAATAATTAGCTGCTGATGTGTGGGATTATTCATAGTTTCAaaccaaacaaatacatttctgccaTTTGAACTTGCCTGTTCAAGCAAATCAGCTTCATTAACTGTCAGTTTGTCTGTGCCAAATCAATCTGGTTTAAATCACTATTTAGTAATAATCACTGTTGTAGTAAGCAATGCGCAACGTATTATTTCAATGATTACCTTAATTTgatcagttttgtattttttactatATCGCATAATAATACTAGTGTGTGTCTGTACTTTTAGTGTGATTTCGCAAACAAATCAAACGTGTGATTGTAACCTGAAATCAGGTGTCAGGGCCTCAAAGGCTTTTGTAATCCAATTTATGGAgtcataattaattataaaaaatcaataatttaataaaatgttcatttgacCCATGTGGTATTTGCTTATAtatgctactactactactactaatcataataataaacccCTAAGAATTATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42147 lncRNA downstream 150619 13610216 ~ 13612771 (-) True G28434
TU42096 lncRNA downstream 330687 13428164 ~ 13432703 (-) False G28397
TU42094 lncRNA downstream 330721 13428028 ~ 13432669 (-) True G28397
XR_006250599.1 lncRNA downstream 419133 13343726 ~ 13344257 (-) True LOC122342564
TU42067 lncRNA downstream 443642 13311873 ~ 13319748 (-) True G28377
TU42310 lncRNA upstream 35988 13820696 ~ 13827052 (-) True G28545
TU42337 lncRNA upstream 82069 13866777 ~ 13867298 (-) True G28564
TU42309 lncRNA upstream 84714 13869422 ~ 13870614 (-) True G28544
TU42341 lncRNA upstream 95323 13880031 ~ 13880847 (-) True G28568
TU42346 lncRNA upstream 96597 13881305 ~ 13882012 (-) True G28569
XM_043237139.1 mRNA downstream 2534 13750834 ~ 13760856 (-) True LOC122342931
XM_043237140.1 mRNA downstream 2539 13750834 ~ 13760851 (-) False LOC122342931
XM_043237141.1 mRNA downstream 2553 13750834 ~ 13760837 (-) False LOC122342931
XM_043237142.1 mRNA downstream 2655 13750834 ~ 13760735 (-) False LOC122342931
XM_043236996.1 mRNA downstream 14402 13736605 ~ 13748988 (-) True LOC122342857
XM_043237662.1 mRNA upstream 42483 13827191 ~ 13831851 (-) False LOC122343280
XM_043237661.1 mRNA upstream 42483 13827191 ~ 13831851 (-) False LOC122343280
XM_043236599.1 mRNA upstream 185556 13970264 ~ 13975630 (-) True LOC122342633
XM_043236601.1 mRNA upstream 191097 13975805 ~ 13980615 (-) False alg10
XM_043236600.1 mRNA upstream 192648 13977356 ~ 13980608 (-) True alg10
XR_006250767.1 other downstream 64675 13692945 ~ 13698715 (-) False LOC122343399
XR_006250766.1 other downstream 64675 13693180 ~ 13698715 (-) False LOC122343399
TU42098 other downstream 340851 13411624 ~ 13422539 (-) False G28397
XR_006250597.1 other downstream 401452 13316932 ~ 13361938 (-) False tmcc3
XR_006250741.1 other upstream 30866 13815574 ~ 13831851 (-) True LOC122343280
TU42363 other upstream 190649 13975357 ~ 13980559 (-) True G28575
TU42429 other upstream 384714 14169422 ~ 14176725 (-) False cerk
TU42539 other upstream 911152 14695860 ~ 14697186 (-) False LOC122342862
TU42549 other upstream 1023889 14808597 ~ 14810137 (-) False LOC122342642

Expression Profile