RNA id: XM_043237574.1


Basic Information

Item Value
RNA id XM_043237574.1
length 497
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC122343240
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3024248 ~ 3024825 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTGATAGCACTGGCTTTATAAAGGGGCAGAGGATCAGGAATTATTTATACAGACTCTAATACTACAGTGCGTCATGGCGGTGTCCGGTCATCTCGGGTTGGCGTCTCTGGTCGTGTTGATGCTGGCGTCTCAGCTGGACTTTTCCAGCGCCGCCGTGCTCGTGTATGACTTGCACGCCAACAACCTGTCCGGTGATGCTGCTGGAAACAAACCCGATCCGTACCTCAAGATCTGGTGTGGTGGCTCTTTCGAGGATACAAATTACATCAAAGATAATTCTAATCCTCAGTGGACAGAGAGCTTCACCTTCTCAAGCTGTGATTCCGGCGACAAACTGAAGATGGAGGTGTGGGACAAAGACACGACGTACGACGATCACTTGGGCTGGTACAGTGGACCGGTGGGAATCGGAAACAACaatcacatttctttttctgttggACAAGGCACTATGTATTTAAGCTACGATGTGAAATAAATCTGCTCCAAACACGGA

Function

GO:

id name namespace
GO:0004175 endopeptidase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38062 lncRNA downstream 12034 3006770 ~ 3012214 (-) True ccdc3a
TU38074 lncRNA downstream 27790 2980159 ~ 2996458 (-) True G25625
XR_006250774.1 lncRNA downstream 486242 2534205 ~ 2538006 (-) True LOC122343423
TU37715 lncRNA downstream 486790 2535072 ~ 2537458 (-) False LOC122343423
TU37702 lncRNA downstream 551214 2472284 ~ 2473034 (-) False LOC122342907
XR_006250573.1 lncRNA upstream 91579 3116404 ~ 3117297 (-) True LOC122342459
XR_006250572.1 lncRNA upstream 92654 3117479 ~ 3119550 (-) True LOC122342458
TU38132 lncRNA upstream 355833 3380658 ~ 3676399 (-) True G25673
XR_006250643.1 lncRNA upstream 377999 3402824 ~ 3403502 (-) True LOC122342758
XR_006250642.1 lncRNA upstream 391762 3416587 ~ 3417917 (-) True LOC122342757
XM_043236920.1 mRNA downstream 2736 3019092 ~ 3021512 (-) True LOC122342805
XM_043237663.1 mRNA downstream 6037 3017632 ~ 3018211 (-) True LOC122343283
XM_043237125.1 mRNA downstream 10889 3012766 ~ 3013359 (-) True si:ch211-240l19.8
XM_043237124.1 mRNA downstream 17456 2999882 ~ 3006792 (-) False ccdc3a
XM_043237077.1 mRNA downstream 86231 2935107 ~ 2938017 (-) False nudt5
XM_043236381.1 mRNA upstream 2246 3027071 ~ 3094405 (-) True wnk1b
XM_043236825.1 mRNA upstream 329544 3354369 ~ 3356141 (-) True LOC122342759
XM_043236824.1 mRNA upstream 375555 3400380 ~ 3402341 (-) True LOC122342755
XM_043236169.1 mRNA upstream 493864 3518689 ~ 3520928 (-) True LOC122342398
XM_043236172.1 mRNA upstream 496869 3521694 ~ 3526313 (-) True LOC122342400
TU38086 other downstream 2791 3021062 ~ 3021457 (-) False LOC122342805
XR_006250644.1 other downstream 648532 2302327 ~ 2375716 (-) False dock4b
XR_006250645.1 other downstream 648532 2304346 ~ 2375716 (-) False dock4b
XR_006250653.1 other downstream 935669 2042953 ~ 2088579 (-) True cald1a
TU37444 other downstream 1121681 1901843 ~ 1902567 (-) False rsph9
TU38175 other upstream 510012 3534837 ~ 3547467 (-) False LOC122342819
TU38177 other upstream 523401 3548226 ~ 3577096 (-) False LOC122342819
TU38193 other upstream 576175 3601000 ~ 3601974 (-) False LOC122342822
TU38194 other upstream 577533 3602358 ~ 3604270 (-) False LOC122342823
TU38442 other upstream 1240101 4264926 ~ 4267495 (-) True G25880

Expression Profile