RNA id: XM_043237592.1


Basic Information

Item Value
RNA id XM_043237592.1
length 1004
RNA type mRNA
GC content 0.49
exon number 11
gene id nmu
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17565453 ~ 17578804 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGATTTCGCAGGGAACGGCTCCTGGGCGCTTTGGCCCCCCAGATGCATGATGACGGGGCCTCCATACGGACACGGGGTGATGCTTCAGTAAGGCACTTCAAGTAACTCCAGCTCCCTTTCAAAGCTCTCACCCCGGTCGATTTACGAAGAGGGTGTGTGACTCTGAGAGTTCATAATGCTGTGCTGTAAGTCAGAGTGAGAAAGCAGAGCGGCAGACGCACGAGAGTATGAGGAGCAGCAGTCAGTGTGAACACGGAGCAGCTCAGAGTCAGAGCGCCATGAGCCCAGCACACAACTCAGCCCTGATGCTCGCTGTCCTCTTCATCTCCTTCATACCCATCACCACAGGTGTTCCAGTGCTCTTGAATCCATCTTCAATAGAGCACGAGCAGTTACTAACCCAGATAACTGATCTGTGCTCGTTCTACCTCTCTGCAGACCCATCCTTTAGAACATCTGATGTCCTGGAGGACCTGTGTTTCCTAATGCTGGGATCGCTGCAAAAATCGGAGGAGATCACAGCTCGAGAGACCAGCAAAAGGtttttatttcattacactAAACCGAATGGTGCAGGATTGTCAGATGGGACGTCTACTGTGTTGCACCCTCTTCTGGAGCTCATACCCCAGCTTGCCAGAAGAAGAAGCAggagaatgaaattaaatGATGAGCTTCAGGGGCCCGGACGGATCCAGAGCAGAGGATATTTCCTTTATAGGccacGAAATGGAAGAAGATCTGACGAATATGTGTAAAACAAAGAATCTTAAAATCAGACTAGCGTACCTGCTAACGTCTGACCAATGTTTTCAGCGGCGCCAGACCCCGTGATCCAGAGCCGGTCAACCTTAACACGTCACGTCACTCGTTCCAGAAAACACCCCTCTATTGAATTGTGATGTTGAATGTACGATCAGAATCCAAATAAAGTATTCCAACGTTCCAACGTTCCTGTTCGTGTAACTGTGCCGTGTCTTTTGaattaaaagcattataaaata

Function

GO:

id name namespace
GO:0006940 regulation of smooth muscle contraction biological_process

KEGG:

id description
K05249 NMU; neuromedin U

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43359 lncRNA upstream 11263 17553833 ~ 17554190 (+) True G29272
TU43253 lncRNA upstream 179773 17385289 ~ 17385680 (+) True G29200
TU43244 lncRNA upstream 270813 17294375 ~ 17294640 (+) True G29192
TU43233 lncRNA upstream 344837 17220257 ~ 17220616 (+) True G29181
TU43230 lncRNA upstream 345939 17219142 ~ 17219514 (+) True G29178
XR_006250563.1 lncRNA downstream 88346 17667150 ~ 17669761 (+) True LOC122342426
XR_006250674.1 lncRNA downstream 131251 17710055 ~ 17711711 (+) True LOC122343158
TU43407 lncRNA downstream 159263 17738067 ~ 17739667 (+) True G29305
TU43408 lncRNA downstream 166724 17745528 ~ 17746317 (+) True G29306
TU43425 lncRNA downstream 238742 17817546 ~ 17817933 (+) True G29317
XM_043236627.1 mRNA upstream 75158 17483433 ~ 17490295 (+) True LOC122342653
XM_043236626.1 mRNA upstream 75158 17483433 ~ 17490295 (+) False LOC122342653
XM_043236628.1 mRNA upstream 75158 17484898 ~ 17490295 (+) False LOC122342653
XM_043237874.1 mRNA upstream 154601 17397135 ~ 17410852 (+) True esr2a
XM_043237875.1 mRNA upstream 154601 17397135 ~ 17410852 (+) False esr2a
XM_043236808.1 mRNA downstream 3266 17582070 ~ 17630822 (+) True clocka
XM_043236810.1 mRNA downstream 3266 17582070 ~ 17630822 (+) False clocka
XM_043236809.1 mRNA downstream 28270 17607074 ~ 17630822 (+) False clocka
XM_043236807.1 mRNA downstream 65631 17644435 ~ 17665897 (+) True kdr
XM_043237278.1 mRNA downstream 227036 17805840 ~ 17811463 (+) True LOC122343009
TU42966 other upstream 1091072 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 1579727 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 1723598 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 1910272 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 2009771 15439334 ~ 15555682 (+) True G28806
TU43729 other downstream 721611 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 857656 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 1304375 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 1711416 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 2152458 19731262 ~ 19786128 (+) False G29835

Expression Profile